PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G2093
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 685aa    MW: 75554 Da    PI: 6.9674
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G2093genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.6e-23121222199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF +   +++ 
  Gh_D10G2093 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLR--ADNGD 214
                  89****************************985444444..8999*********************************************3..47788 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Gh_D10G2093 215 LCVGIRRA 222
                  8****996 PP
2Auxin_resp109.43.7e-36281364183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa++a+++++FevvY+Pr+st+eF+vk++++++a+++++ +GmRfkm fetedss++++ +G ++  + +dp+rWpnS+Wr+L+
  Gh_D10G2093 281 AASRAASGQPFEVVYYPRTSTPEFCVKASSIRAAMQIQWYPGMRFKMPFETEDSSRISWfMGAISTAKVVDPIRWPNSPWRLLQ 364
                  68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.62E-29113224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-36116224IPR015300DNA-binding pseudobarrel domain
CDDcd100178.42E-22120221No hitNo description
SMARTSM010196.6E-22121223IPR003340B3 DNA binding domain
PfamPF023621.5E-21121222IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183121223IPR003340B3 DNA binding domain
PfamPF065078.2E-31281364IPR010525Auxin response factor
PROSITE profilePS5174519.671599682IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MITVMDSRKE VVKNSEKCLD PQLWHACAGG MVQMPSVNSK VFYFPQGHAE HANGNVDFGN  60
LPIPSLVLCR VSAVRFMADP ETDEVYAKIM LVPLRENSFG VEDDGFDGNV GVENPEKSAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT  180
PRRHLLTTGW SNFVNHKKLV AGDSIVFLRA DNGDLCVGIR RAKRGLGGGH EFPGWNSASG  240
TSGSQIGSYS PFLREGESKL MRKDCNGDPR GRVRADSVIE AASRAASGQP FEVVYYPRTS  300
TPEFCVKASS IRAAMQIQWY PGMRFKMPFE TEDSSRISWF MGAISTAKVV DPIRWPNSPW  360
RLLQVAWDEP DLLHNVKRVS PWLVELVTNI PAINLNPFSP PRKKMRLPQH PDISFLNQIP  420
MPSFSGNSFR SSSPMRCITD NIPGGIQGAR HEPFGLSSSD LRSNKLHSGL FPSGFHQLDR  480
TAPPTRLSGD NFCSDNANNT NISSLLTIGN PTQSLKQSND SKTPHIVLFG QLIFCEQRAS  540
QSCSGDTVGN SSSDGNTEKT AISSDGTGSV LHQNVRENSS DEGFPWCKEH QKTDLGLETG  600
HCKVFMESEN VGRTLDLSVL GSYEELFGKL ANMFGIESSE MLSSVLYRDA AGSVKNTGDE  660
PFSEFMKTAR RLTILMDSSS DNLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-77138533388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.145270.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098522510.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016733393.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1U8N6B10.0A0A1U8N6B1_GOSHI; Auxin response factor
TrEMBLA0A2P5R5C00.0A0A2P5R5C0_GOSBA; Auxin response factor
STRINGGorai.011G238900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]