PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G1826
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 980aa    MW: 109144 Da    PI: 7.4864
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G1826genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.62.7e-54201363118
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e ++rwl++ e+++iL n++k++l+ ++++rp+ gsl L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK+g+v+vl+cyYah++ n++fqrrcy
  Gh_D10G1826  20 QEaQHRWLRPVEVCEILGNYTKFRLSDKPPSRPSAGSLYLFDRKTIRYFRKDGHDWRKKKDGKTVREAHEKLKIGSVDVLHCYYAHGQFNENFQRRCY 117
                  5559********************************************************************************************** PP

         CG-1 100 wlLeeelekivlvhylevk 118
                  w+L+ ++e+iv+vhy+evk
  Gh_D10G1826 118 WMLDGQFEHIVFVHYREVK 136
                  ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.81615141IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038596.2E-4821134IPR005559CG-1 DNA-binding domain
CDDcd001027.14E-4442530No hitNo description
Gene3DG3DSA:2.60.40.109.1E-6442530IPR013783Immunoglobulin-like fold
PfamPF018333.9E-4443528IPR002909IPT domain
SuperFamilySSF812967.28E-17443529IPR014756Immunoglobulin E-set
SuperFamilySSF484033.26E-17616727IPR020683Ankyrin repeat-containing domain
CDDcd002049.36E-16621724No hitNo description
Gene3DG3DSA:1.25.40.204.1E-17621730IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.457632736IPR020683Ankyrin repeat-containing domain
PfamPF127962.1E-6637727IPR020683Ankyrin repeat-containing domain
SMARTSM002487.0E-4665694IPR002110Ankyrin repeat
PROSITE profilePS5008811.114665697IPR002110Ankyrin repeat
SMARTSM00248220704733IPR002110Ankyrin repeat
SuperFamilySSF525404.78E-9811889IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000155.6838860IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242839868IPR000048IQ motif, EF-hand binding site
PfamPF006120.034841859IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0037861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.194862886IPR000048IQ motif, EF-hand binding site
PfamPF006121.5E-4865882IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MAQGRRYLPN QQLDLQQILQ EAQHRWLRPV EVCEILGNYT KFRLSDKPPS RPSAGSLYLF  60
DRKTIRYFRK DGHDWRKKKD GKTVREAHEK LKIGSVDVLH CYYAHGQFNE NFQRRCYWML  120
DGQFEHIVFV HYREVKEGYR SGISCLLADP GSLSESLQTG STPSPAHENS PAATIQVSPA  180
STSKIGWNRK TLSSEFEDVD SGNDPSADAP DQPIYGSKSC TASVEPEVAG FPESGRNPPG  240
SWLGESNFNH NTVYGSSFWP GSHHLATNNI SMLDHKLYVE QPTTSDFIIK EAQVRLHDVS  300
DAVTCGDKLI NDGDVQAVGE YPEKLIQELQ GHDFNFIGLQ SQNYSGPQKV VSTSMQNEKE  360
PKGIDKNNDE PGELKKLDSF GRWMDKEIGA DCDDSLMASD SANYWSTLNT ETDDKEVSSL  420
SRHMQLDIDS LGPSLSQEQL FSIVDFSPDW AYSGVGTKVL LVGNFLKNKE LPSAAKWGCM  480
FGEIEVSAEV LTKNVIRCQV PSHVPGRVPF YITCSNRLAC SEVREFEYRE KPPGFSFFTA  540
VKCTAQEEMH LQVCLEKLLH TGPGRKWLDC SVEECDKCKL KSSICSMGEA SANDCIQSKE  600
GLILNLLKQK LSQWLIEKVH EDGKGPLILD DKGHGVIHLA ASLGYEWAMN PIVAAGISPN  660
FRDAKGRTAL HWASYFGREE TVIALIKLGA SPGAVDDPTP NFPGGRTAAD LASSRGHKGI  720
AGYLAEANLT THLSSLTVNQ NVVGNDAATK PAQEAIETPS EVAPSNRTLD DNCSLKGSLA  780
AVRKSAHAAA LIQAAFRARS AHFRQLTKGN DDMSEISLEL GILGSLNRLQ KTSHFGDYLH  840
TAASKIQQKY RGWKGRKEFL KIRNRIVKIQ AHVRGHQVRK QYTKLVWSVG LVEKIILRWR  900
RKGAGLRGFR VQTATNKTVA GIEIDDEYEF LQVGQQQKVD GIEKALARVK SMARDQEARE  960
QYMRLTTKFG ESKVNFQLLL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.220920.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098916450.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4685504e-51AM468550.2 Vitis vinifera contig VV78X013284.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455731.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
TrEMBLA0A0D2RQF70.0A0A0D2RQF7_GOSRA; Uncharacterized protein
STRINGGorai.011G204700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16526911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein