PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D10G1818 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 33405.1 Da PI: 6.3976 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.5 | 3.6e-19 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l+d+++ +G g+W++ ar+ g++Rt+k+c++rw++yl Gh_D10G1818 24 RGPWTVEEDFKLIDYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 71 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.4e-16 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Gh_D10G1818 77 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.003 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.95E-31 | 21 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-16 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-17 | 24 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.82E-12 | 26 | 71 | No hit | No description |
PROSITE profile | PS51294 | 23.246 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 77 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-23 | 79 | 125 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MDVRGRDCVP KAQSSEEDQM ELRRGPWTVE EDFKLIDYIA THGEGRWNSL ARCAGLKRTG 60 KSCRLRWLNY LRPDVRRGNI TLEEQLLILE LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT 120 RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAAKAA SSTSTTAVTT AVVGTEPMVF 180 PDDHHLGGGA QQVTSSSNNN YTLENSSTTA ASSDSFGTQV SPVSDFADYY SNISINHNPN 240 PNCFEAGNYY NNGLDFQCLE QNNPWLDTVD GSDNIFDAED LYFLQQQFNF NM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 21 | 118 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016700885.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 5e-91 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A1U8KEI0 | 0.0 | A0A1U8KEI0_GOSHI; transcription factor MYB108-like | ||||
STRING | Gorai.011G203900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06490.1 | 3e-87 | myb domain protein 108 |
Publications ? help Back to Top | |||
---|---|---|---|
|