PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G1797

Common Name

WRKY95

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 360aa MW: 39610 Da PI: 6.7245

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G1797	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.9	5e-34	196	254	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCtsagC vkk+vers++dp++v++tYeg+H+h+ Gh_D10G1797 196 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSAGCGVKKRVERSSDDPSIVVTTYEGQHKHP 254 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	1.0E-98	1	358	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	2.0E-35	181	256	IPR003657	WRKY domain
SuperFamily	SSF118290	6.93E-30	188	256	IPR003657	WRKY domain
PROSITE profile	PS50811	33.189	191	256	IPR003657	WRKY domain
SMART	SM00774	2.8E-39	196	255	IPR003657	WRKY domain
Pfam	PF03106	9.8E-28	197	254	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEKKKENLIS MANLRFSDEN PSAVAAAAAA AAATSFGGSI FDMATGAGAC DGDTKWGSSL 60 GFMDLLGIHQ DFIAPSLFDS FQPPPILPPP PPSTSSEPLL HQQLDTKQLQ ALPSPASIVP 120 ESSEVLNNPA TPNSSSFSSS SNEAANDHEP TKAEDDEEEE QDQDKTKKQL KPKKKNQKRQ 180 REPRFAFMTK SEVDHLDDGY RWRKYGQKAV KNSPFPRSYY RCTSAGCGVK KRVERSSDDP 240 SIVVTTYEGQ HKHPYPITPR GSIGINMDPS SSFGRSFVVP QPQYLHQQQQ LQPYIYNSSP 300 SLNITSITSS GSSFNASIPD FLQDRRFNTP PTSSSASLLR DHGLLQDIVP TQMRKEAKEQ

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEKKKENLIS MANLRFSDEN PSAVAAAAAA AAATSFGGSI FDMATGAGAC DGDTKWGSSL  60
GFMDLLGIHQ DFIAPSLFDS FQPPPILPPP PPSTSSEPLL HQQLDTKQLQ ALPSPASIVP  120
ESSEVLNNPA TPNSSSFSSS SNEAANDHEP TKAEDDEEEE QDQDKTKKQL KPKKKNQKRQ  180
REPRFAFMTK SEVDHLDDGY RWRKYGQKAV KNSPFPRSYY RCTSAGCGVK KRVERSSDDP  240
SIVVTTYEGQ HKHPYPITPR GSIGINMDPS SSFGRSFVVP QPQYLHQQQQ LQPYIYNSSP  300
SLNITSITSS GSSFNASIPD FLQDRRFNTP PTSSSASLLR DHGLLQDIVP TQMRKEAKEQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-28	189	256	10	77	Probable WRKY transcription factor 4
2lex_A	3e-28	189	256	10	77	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2995	0.0	ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN609590	0.0	JN609590.1 Gossypium hirsutum WRKY48 mRNA, complete cds.
GenBank	KF669855	0.0	KF669855.1 Gossypium hirsutum WRKY transcription factor 95 (WRKY95) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016700874.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	8e-65	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	V9INR1	0.0	V9INR1_GOSHI; WRKY transcription factor 95
STRING	Gorai.011G201800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	3e-56	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dou L, et al. Genome-wide analysis of the WRKY gene family in cotton. Mol. Genet. Genomics, 2014. 289(6): p. 1103-21 [PMID:24942461]