PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G1770

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 914aa MW: 103101 Da PI: 8.0685

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G1770	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.2	1.1e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 ++e k+rwl+++ei+aiL n++ + ++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+ +nptf rrc Gh_D10G1770 29 MEEaKSRWLRPNEIHAILSNYKYFPIHVKPVNLPQSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGLDNPTFVRRC 126 55669******************************************************************************************* PP CG-1 99 ywlLeeelekivlvhylevk 118 ywlL+++le+ivlvhy+e+k Gh_D10G1770 127 YWLLDKTLENIVLVHYRETK 146 ***************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.154	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-75	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.4E-46	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.82E-11	361	446	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	2.8E-18	533	657	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.9E-7	546	625	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.4E-16	548	658	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.66E-15	551	655	No hit	No description
PROSITE profile	PS50297	15.963	563	667	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.7E-6	596	625	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.155	596	628	IPR002110	Ankyrin repeat
SMART	SM00248	2700	635	666	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	6.577	744	770	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	51	759	781	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.705	760	789	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	6.1E-4	782	804	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.402	783	807	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.1E-4	784	804	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	9	862	884	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.206	864	891	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.077	864	884	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 914 aa Download sequence Send to blast
MDGSGSGRLA GTEIHGFYTL EDLDVQTMME EAKSRWLRPN EIHAILSNYK YFPIHVKPVN 60 LPQSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGLDNP 120 TFVRRCYWLL DKTLENIVLV HYRETKEGSP ATPVNSNSCL TTDQSTPLLV MEDFDSGAAN 180 AYYKDLSDSI KANHEMTLHE INTLEWDELL VTNDGNDSAV SSGDMSTCFD QWNQKMLNGL 240 SNDGGPISAY NSSPDISLLD NLVDPVAQSN NAYLNTPGGV CYQTPGTEVN STVQREDSSA 300 IGMGKPLDLL INNGLESQDS FGKWINCTVT ASPRSMGDPV PESSSSSGQD SLTSPGEIFS 360 ITVVSPAWAY STEKTKILVT GVFHQAYQHL AKSNLFCVCG DVCYPVETIQ VGVYRCLLSQ 420 HAPGLVKLYM SLDGHKPISQ VLNFEYHAPL LHDPVVPLED KSRWEEFRLQ MRLAYLLFST 480 SKSLSILSGK VSPNSLKEAK KFAQKTSNIS NSWTYLIQSI EENRASFTQA KDSLFEIALK 540 NRLKDWLLER IIYGSKTTEY DAQGQGVIHL CAIIGYAWAI YLFSWSGLSL DFRDKHGWTA 600 LHWAAYYGRE KMVAVLLSAG AKPNLVTDPT TQNPSGCTAA DLASLNGYDG LAAYLSEEAL 660 VAQFNDMALA GNASGSLQTS RTEATNLVNL KEDELYLRET LAAYRTAADA AARINTAFRA 720 HSFKVRAKAV ESYNAEEEAR SIIAAMKIQH AFRNYEAKRK MAAAAHIQYR FRTWKMRKDF 780 LNMRRQAIKI QAAFRGFQAR RQYRKIVWSV GVLEKAILRW RLRRKGFRGL QITTDEAVEE 840 QRQETYIEEA YYISSRKQAE ERVEKAVIRV QSMFRSKKAQ QEYRRMKLAH DLATLEYESL 900 IGPLSDMMLK DHRK

Sequence ? help Back to Top

Protein Sequence Length: 914 aa Download sequence Send to blast

MDGSGSGRLA GTEIHGFYTL EDLDVQTMME EAKSRWLRPN EIHAILSNYK YFPIHVKPVN  60
LPQSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGLDNP  120
TFVRRCYWLL DKTLENIVLV HYRETKEGSP ATPVNSNSCL TTDQSTPLLV MEDFDSGAAN  180
AYYKDLSDSI KANHEMTLHE INTLEWDELL VTNDGNDSAV SSGDMSTCFD QWNQKMLNGL  240
SNDGGPISAY NSSPDISLLD NLVDPVAQSN NAYLNTPGGV CYQTPGTEVN STVQREDSSA  300
IGMGKPLDLL INNGLESQDS FGKWINCTVT ASPRSMGDPV PESSSSSGQD SLTSPGEIFS  360
ITVVSPAWAY STEKTKILVT GVFHQAYQHL AKSNLFCVCG DVCYPVETIQ VGVYRCLLSQ  420
HAPGLVKLYM SLDGHKPISQ VLNFEYHAPL LHDPVVPLED KSRWEEFRLQ MRLAYLLFST  480
SKSLSILSGK VSPNSLKEAK KFAQKTSNIS NSWTYLIQSI EENRASFTQA KDSLFEIALK  540
NRLKDWLLER IIYGSKTTEY DAQGQGVIHL CAIIGYAWAI YLFSWSGLSL DFRDKHGWTA  600
LHWAAYYGRE KMVAVLLSAG AKPNLVTDPT TQNPSGCTAA DLASLNGYDG LAAYLSEEAL  660
VAQFNDMALA GNASGSLQTS RTEATNLVNL KEDELYLRET LAAYRTAADA AARINTAFRA  720
HSFKVRAKAV ESYNAEEEAR SIIAAMKIQH AFRNYEAKRK MAAAAHIQYR FRTWKMRKDF  780
LNMRRQAIKI QAAFRGFQAR RQYRKIVWSV GVLEKAILRW RLRRKGFRGL QITTDEAVEE  840
QRQETYIEEA YYISSRKQAE ERVEKAVIRV QSMFRSKKAQ QEYRRMKLAH DLATLEYESL  900
IGPLSDMMLK DHRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2104	0.0	boll\| leaf\| ovule\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX588474	1e-116	JX588474.1 Gossypium hirsutum clone NBRI_GE22909 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016732317.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1U8MZQ3	0.0	A0A1U8MZQ3_GOSHI; calmodulin-binding transcription activator 5-like isoform X2
STRING	Gorai.011G198600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]