PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D10G1726 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 28900.6 Da PI: 8.6293 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.3e-20 | 90 | 138 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg++ taeeAa+a+++a+k+++g Gh_D10G1726 90 YRGIRRRP-WGKWAAEIRDPH----KgVRIWLGTYNTAEEAARAYDEAAKRIRG 138 9*******.**********72....35************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.236 | 89 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-23 | 89 | 147 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 89 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-37 | 89 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.49E-33 | 89 | 148 | No hit | No description |
Pfam | PF00847 | 1.9E-14 | 90 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 90 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MCGGAIISDF IAVKRGRKLT AEDLWSELDT FSDLLGLDYG NGKDPFTQFD NTKAGSKAKN 60 LEKVTNESTQ KTSRGREKEG KTQRTRKNIY RGIRRRPWGK WAAEIRDPHK GVRIWLGTYN 120 TAEEAARAYD EAAKRIRGDK AKLNFPQTPR LTQPPAKKRC MMAPELTPPS SETKSPPTPQ 180 PFMGFGYENG VYRPSEAMES EMELKEQISS LESFLGLEPD EMTTELSGSA EPESVNLWML 240 DHLVTHHQQQ PQLFY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 90 | 147 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.8128 | 0.0 | boll| ovule| root| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY779338 | 0.0 | AY779338.1 Gossypium hirsutum AP2/EREBP transcription factor ERF-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455978.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | Q5U8L6 | 0.0 | Q5U8L6_GOSHI; AP2/EREBP transcription factor ERF-2 | ||||
STRING | Gorai.011G193600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16770.1 | 7e-53 | ethylene-responsive element binding protein |