PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G1331
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 511aa    MW: 55568.1 Da    PI: 6.7697
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G1331genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08331378455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gh_D10G1331 331 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 378
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.21E-10325382No hitNo description
SuperFamilySSF474596.54E-17325395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-17327398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5331378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MEKDQVFMGE AVQAGWNSCS FGMEMETDEL NCVGSCFLNP KWHNLMDQSD PFESALSSMV  60
CSPAASNAGS TNFPASGDNT MMTDLIGKLG NICNTGDISP QSLIKPQNNN NNCSSNTSCY  120
TSPLDSPPKL NLSMMGGNQI LKHPSLVPVS VDPGFAERAA RFSCFNGLNA QLGVTEAEFV  180
QLTRVSTNQS VMVTGSQVHV PDSNKNTLQD GNSCSDKRNS RLSRCSSPEN GDSKDESSIS  240
EQIPGVGSSI KAQNDANARK RKSMPRGKAK ETPSPAAADA KIAEENDEST AKRSKQQNDS  300
AKAENKENPK PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKFL QDLVPGCNKV  360
TGKALMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMNANTE ALLSKDMFRS RGSLPHSHYP  420
MDSSALAFGL RYQPQQGLPM NNGISNDTQI QFSMNPANAA LHKTQGLQLP PVDGISDANP  480
QIGSFWGDDL QSIVQMGFGQ NQPQSCQSKH S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.209170.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016699283.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A1U8KEA40.0A0A1U8KEA4_GOSHI; transcription factor bHLH62-like
STRINGGorai.011G150200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.16e-80bHLH family protein