PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G1288 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 35633.5 Da PI: 8.2997 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.3 | 4.3e-11 | 267 | 312 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ +k s a++L +Av++Ik Lq Gh_D10G1288 267 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVQHIKGLQ 312 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.98 | 261 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-14 | 264 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-11 | 265 | 316 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 266 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-8 | 267 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 267 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MYPSSSSQKP MGQSGLTRYG SAPGSFLANA VDSVIGADPN LVGHYFSAAD SSSLTSESTC 60 KVSSSNDPRE PKSAAAAAPA PPHPPPHHPH GSYPAPSSSS LLRQRSSPAG FLSHLTSENG 120 FSVTMGNRNY SSQGSGNGGH GVSRLKSQLS FTRQDSLSQI SEVSENLVDG VSSNSNHQNP 180 AHSFAAAGFG MDSWDNTNSI VFSAPSSKRA KNLDGDIYNC FNALETQFSL PQTTLEMATV 240 EKLLHIPEDS VPCKIRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MDKQTSYADM 300 LDLAVQHIKG LQNEVQKLHK ELESCTCGCK QSS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9813 | 0.0 | boll| ovule| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012456514.1 | 0.0 | PREDICTED: transcription factor bHLH128 | ||||
Refseq | XP_016677778.1 | 0.0 | PREDICTED: transcription factor bHLH128-like | ||||
Refseq | XP_016699171.1 | 0.0 | PREDICTED: transcription factor bHLH128-like | ||||
Swissprot | Q8H102 | 1e-98 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A0D2UT46 | 0.0 | A0A0D2UT46_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8K9J2 | 0.0 | A0A1U8K9J2_GOSHI; transcription factor bHLH128-like | ||||
TrEMBL | A0A2P5XVF4 | 0.0 | A0A2P5XVF4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G144600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11777 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 2e-82 | bHLH family protein |
Publications ? help Back to Top | |||
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