PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G1206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 149aa MW: 16630 Da PI: 9.4207 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.9 | 5.8e-06 | 32 | 71 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d++ +++ +L++l+ + +K + a++L +A+eYI+ L Gh_D10G1206 32 KDRKDKVGERIVTLQQLVSPY-----GKTDTASVLLQAMEYIQFL 71 78999999**********999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-9 | 21 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.674 | 22 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-12 | 24 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0017 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.43E-5 | 32 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MENKRSPCSV DHGSFTPLAS KRQKSDLSIS TKDRKDKVGE RIVTLQQLVS PYGKTDTASV 60 LLQAMEYIQF LHEQVKVLSA PYLQTSPTNN MQASIKPAQE LEHYSLRSQG LCLVPLSYTM 120 GVVHSNGADI WAPIKTTSPK FDKPFSQFN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.13573 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455220.1 | 1e-109 | PREDICTED: transcription factor bHLH113-like isoform X1 | ||||
Refseq | XP_012455223.1 | 1e-109 | PREDICTED: transcription factor bHLH113-like isoform X2 | ||||
Swissprot | Q7XJU2 | 6e-59 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A0D2SZF1 | 1e-107 | A0A0D2SZF1_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2UJK1 | 1e-107 | A0A0D2UJK1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G135700.1 | 1e-108 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 2e-61 | bHLH family protein |
Publications ? help Back to Top | |||
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