PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G1089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 353aa MW: 38718.9 Da PI: 7.1521 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl Gh_D10G1089 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPVKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Gh_D10G1089 67 RGKFSMQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.858 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.59E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.536 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.83E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PVKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SMQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKLG 120 IDPITHKPKS DALLSTDAQS KSAANLSHMA QWESARLEAE ARLVRESKLR SHSHSHSFQH 180 RLTRPPTAAF ASSAGQLVNK TAWNSTAGWS KSSEVNNGVV NNGFGDLESP KSTLTSSENG 240 VGLSSMGMPD FVGTASASSE IKQEGEQEWK GFGSSTNLAM ENGFNDIGNA MEDGFINLLL 300 NDSTDPSLSD SGKESDGNSG DGTASDDHYE DNKNYWNSIL DLVNSSPSGS PMF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.22515 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016698900.1 | 0.0 | PREDICTED: myb-related protein 306-like | ||||
Swissprot | Q9LXF1 | 1e-127 | MYB16_ARATH; Transcription factor MYB16 | ||||
TrEMBL | A0A1U8K8S2 | 0.0 | A0A1U8K8S2_GOSHI; myb-related protein 306-like | ||||
TrEMBL | A0A2P5Q0W0 | 0.0 | A0A2P5Q0W0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G122800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-129 | myb domain protein 16 |
Publications ? help Back to Top | |||
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