PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0984
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 270aa    MW: 30042.8 Da    PI: 8.0171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0984genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-1274125155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++ + ++ L++++P++   + ++ + a+i   A++++k+L+
  Gh_D10G0984  74 QRMTHIAVERNRRKQMSDYLALLKSMMPTS---YVQRGDQASIIGGAINFVKELE 125
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.91E-1272129No hitNo description
SuperFamilySSF474593.66E-1573137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.18973124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-974125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1174136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-879130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MALDTVVFQQ DPFTYGGLND SFTLKQQHET SAQSRGFAFS ATCSSSPANG FAPPCRRKRR  60
RNNNVKNREE IEHQRMTHIA VERNRRKQMS DYLALLKSMM PTSYVQRGDQ ASIIGGAINF  120
VKELEQFLQS LEARKTTEKN PENSSSVSST FSGFFNFPQY SSTTHRSCAA SAGEPVASSS  180
SVANVEVTMV ESHANLKILA GKHPKQLLKM VNGIQSLGLL VLHLNLTSHE DLALYSFSVK  240
IEENCELRRV NEIAAAVYEM VDGFQEESAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15660RKRRR
27485RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016700547.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T41e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1U8KDG80.0A0A1U8KDG8_GOSHI; transcription factor bHLH94-like
STRINGGorai.011G110900.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3686422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]