PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G0938 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 491aa MW: 54943.1 Da PI: 8.3649 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.1 | 5.2e-14 | 252 | 302 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A++ + +k+++lg f+t+ eAa+a+++a+ k +g Gh_D10G0938 252 SKYRGVTLHK-CGRWEARLGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 302 89********.7******5553..1.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.545 | 157 | 217 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-4 | 157 | 217 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-6 | 157 | 223 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-9 | 252 | 302 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-24 | 252 | 312 | No hit | No description |
SuperFamily | SSF54171 | 4.71E-17 | 252 | 312 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.672 | 253 | 310 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-16 | 253 | 310 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-30 | 253 | 316 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-6 | 254 | 265 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-6 | 292 | 312 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MWDLNDCPYK ARDNEYEGCS TQRTSKYGDA GNCKRFGSMS NPCSSAVVIE DGSEEEEDRE 60 GVKTALKKKG SKIFGFSMPY DEEESMESSD PTPVTRQLFP LDEDPEMGTG AGPGFPRAHW 120 VGIKFRQSEP YLCGGKSVES SGPMKKSRRG PRSRSSQYRG VTYYRRTGRW ESHIWLVPDI 180 FITATKSLHF EPITTLRLAY DRAAIKFRGV EADINFSVED YEEDLKQMRN LTKEEFVHVL 240 RRQSTGFPRG SSKYRGVTLH KCGRWEARLG QFLGKKYVYL GLFDTEIEAA RAYDKAAIKC 300 NGKDAVTNFD PSIYGNELNN GGETSGNAGG GHNLDLSLGN SVSKQNNPES GPPQTDWRYQ 360 GFKPEEIQQQ EQACRGDDPH RRSDKHIQSP LSVKSNEMQR YGQLRRPGPG ENHMSHILPP 420 RIVNPSIYQI HIASNSGNGV QIGSDVSLSR SAQQGPHQLI ANAGAASSGF PTQTWQQRNG 480 FHSFITPSRL F |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19863 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: It is detectable at low levels throughout the shoot apex and at enhanced levels in the inflorescence meristem, young floral buds and throughout the early stages of flower development and organogenesis. During floral organ differentiation it becomes spatially restricted to specific organ, tissue and cell types within the flower. | |||||
Uniprot | TISSUE SPECIFICITY: Sepals, petals, stamens, carpels, developing ovules, inflorescence stem, leaf and stem. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016698683.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like isoform X1 | ||||
Refseq | XP_016698684.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | P47927 | 1e-108 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2P5RUY9 | 0.0 | A0A2P5RUY9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G106200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 4e-91 | AP2 family protein |