PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G0933 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 259aa MW: 28573 Da PI: 7.0997 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 118.7 | 3.4e-37 | 10 | 101 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++++isw+e+g+sfvv+++ +f+k++Lp+yFkh+nf+SF+RQLn+YgF+kv ++ weF++++Fk+g+k+ll+ki Gh_D10G0933 10 FLTKTYQLVDDPNTDDVISWNESGTSFVVWKTADFSKDLLPTYFKHNNFSSFIRQLNTYGFRKVVPDK---------WEFANDNFKRGEKQLLSKIS 97 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ Gh_D10G0933 98 RRKT 101 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.0E-39 | 3 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.4E-61 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.4E-34 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.9E-32 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-21 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-21 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.2E-21 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAQRSVPAPF LTKTYQLVDD PNTDDVISWN ESGTSFVVWK TADFSKDLLP TYFKHNNFSS 60 FIRQLNTYGF RKVVPDKWEF ANDNFKRGEK QLLSKISRRK TVTSPPADAP AKGKTSGAAT 120 PSPTDSGEDL GSTSTSSPES KNPGSVETNQ FTDLSEENQK LKRDKEMLSI ELAQAKRKCD 180 ELVAFLTECV KVGPDQINRI MPQGSCGSTI NGEGPGRICG VDDDEKTSEE DMGSLKLFGV 240 WLKGLARKQS CTGDLTLRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-28 | 5 | 104 | 16 | 125 | Heat shock factor protein 1 |
5d5u_B | 9e-28 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
5d5v_B | 9e-28 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
5d5v_D | 9e-28 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2683 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR067416 | 0.0 | KR067416.1 Gossypium hirsutum HSF35 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012457023.1 | 1e-180 | PREDICTED: heat shock factor protein HSF24-like | ||||
Swissprot | P22335 | 1e-101 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A0D2T5Y7 | 1e-178 | A0A0D2T5Y7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G105700.1 | 1e-179 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6101 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 6e-86 | heat shock factor 4 |
Publications ? help Back to Top | |||
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