PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0803
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 703aa    MW: 78160 Da    PI: 6.0546
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0803genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3672.8e-21153253198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++ +++a+++       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F +    ++ 
  Gh_D10G0803 153 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELIATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLR--GANGD 246
                  99****************************975444444..8************************************************4..36777 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  Gh_D10G0803 247 LRVGVRR 253
                  8999987 PP
2Auxin_resp112.54.2e-37279361183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+st+s+F+++Y+Pr+s seF+v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv++ +++ W +S+WrsLk
  Gh_D10G0803 279 ASHALSTRSMFSIFYKPRTSLSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGEEVPERRFSGTIVGVEADKSSAWADSEWRSLK 361
                  789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-42142282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-40150268IPR015300DNA-binding pseudobarrel domain
CDDcd100173.68E-20151253No hitNo description
PfamPF023623.8E-19153253IPR003340B3 DNA binding domain
SMARTSM010192.3E-20153255IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898153255IPR003340B3 DNA binding domain
PfamPF065074.5E-34279361IPR010525Auxin response factor
PfamPF023096.7E-12569665IPR033389AUX/IAA domain
PROSITE profilePS5174526.956575668IPR000270PB1 domain
SuperFamilySSF542772.03E-11577652No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MEQGGGGLNR EHSKGLVNIR VPIRLKGVSM AFPASDIPSA EQQADDPLYR ELWHACAGPL  60
VTLPRVGERV YYFPQGHMEQ LEASMHQGLE HQMPSFDLPS KILCKVASVQ RKAEPDTDEV  120
YAQITLVPEV DQSEVMSPDD PLQEPERCIV HSFCKTLTAS DTSTHGGFSV LRRHADDCLP  180
PLDMTQQPPW QELIATDLHG NEWHFRHIFR GQPRRHLLTT GWSVFVSSKK LVAGDAFIFL  240
RGANGDLRVG VRRLMRQQAN MPSSVISSHS MHLGVLATAS HALSTRSMFS IFYKPRTSLS  300
EFIVSVNKYL EAQSHKLSVG MRFKMRFEGE EVPERRFSGT IVGVEADKSS AWADSEWRSL  360
KVQWDEPSSI IRPDRVSPWE LEPLVATSNS SISQPAQRNK RARPPVLPSP SSDLSSLGIW  420
KSPVESPFSY CDAQRGQPSP KLSSTAKPNS VGFSGNSSLA AVSSSSKYWP NRVENVTESV  480
APVVNKESSE RKQGTGNGCR LFGIQLLDNI NMEENSPLAT ISGTGVNDQP LHSLDANSDQ  540
QSDPSNLNQS DLPSISCEPE KCLRSPQESQ SKQIRSCTKV HMQGMAVGRA VDLTRFDCYE  600
DLLKKLEYMF DIKGQLCGST KNWQVVYTDD EDDMMMVGDD PWNEFCSMVR KIFIYTSEEV  660
RKLSPKIKLP VNDDDDDDSK ATKAGVDTVI NPEDRSSIVG QGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.04639017361Auxin response factor 1
4ldw_A0.04639017361Auxin response factor 1
4ldw_B0.04639017361Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.125270.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}.
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1539830.0DQ153983.1 Gossypium barbadense auxin response factor 1 (ARF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698505.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016698506.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016698507.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016698508.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016698509.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016698510.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016698511.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016698512.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016698513.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016698514.10.0PREDICTED: auxin response factor 1-like
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A1U8K7N80.0A0A1U8K7N8_GOSHI; Auxin response factor
STRINGGorai.011G091100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88252227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]