PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0675
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 401aa    MW: 45800.2 Da    PI: 4.3706
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0675genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.33.5e-17167251286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt++e+l+L++a  +   + +r++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk+k++  +   +++s+++yf++++
  Gh_D10G0675 167 WTEHETLVLLDAWGDCFLQCGRKSLRTEEWQEVAEKVSEIsKIERTETQCRNRLDTLKKKYKKEKAMLTEI-GGTTSKWVYFKKMD 251
                  *************************************775278**************************98.77888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-21166253No hitNo description
Gene3DG3DSA:1.10.10.603.9E-4167231IPR009057Homeodomain-like
PROSITE profilePS500906.191167224IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDDIEDDARY PPNPFGVSHQ QGYGSSNRQK LPLRNIPSSR PIRNQYVDDD EDGEDEVEDL  60
GEEEETLNRS NGVRYVGKGM DDDNEDDDDE DEDDDLLDDD DDDEDDYNEG GDDRKNVVAN  120
LGRHPKKRKL KSLVSSYEFA PRVPAPAVAA PSVLKSSYGG RNSLTDWTEH ETLVLLDAWG  180
DCFLQCGRKS LRTEEWQEVA EKVSEISKIE RTETQCRNRL DTLKKKYKKE KAMLTEIGGT  240
TSKWVYFKKM DMLMSTPPQQ GRLSCGFDSG KYVFMNPRVY LNRANGLDEM RDSPANSEFA  300
DSEEDVSDGL PPKKRRFGRQ SGEDSSVKLL ADSIQKFSDI YEKIENSKRQ QMLELEKMRM  360
DFHRELEMQK RQIMERAQAE IAELQHGENE ANDASGENAS G
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.4070.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016698099.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1U8KBR60.0A0A1U8KBR6_GOSHI; trihelix transcription factor ASIL2-like
STRINGGorai.011G076900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15605916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-67Trihelix family protein