PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0646
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 328aa    MW: 35868.1 Da    PI: 6.5942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0646genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000422082461255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gh_D10G0646 208 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 246
                  6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.534196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-10206258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.92E-6206250No hitNo description
Gene3DG3DSA:4.10.280.101.8E-7210253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MMAGNPSWWS MHLHPPSQHP STLLTTPSPS LFPQYVVEYS ATSLPDNQEL PQSCSQLLSG  60
GFSGEEERLC PSNFQPKKLE NWENQILNPS LRVPVVEVIK QEVTQQHSNL YGHHHASEEF  120
QAPRLPVPPA AWSQIMGTAV LSPSPRSCIT TSSSNMLDFT YNKATDGSIS NTQPPVDHSS  180
ECNSKGSGGV FKKARVQTSS SQPPLKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG  240
YIRFLQSQIE ALSSPYLGTA SPNMRNQQSG QGERNCAFPE DEGQEKQEPK SKDLRSRGLC  300
LVPVSCTQQV GSDNGADYWS PAFGAAFN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.134451e-137boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457034.10.0PREDICTED: transcription factor bHLH68-like
RefseqXP_016698055.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D13e-68BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0D2VJG90.0A0A0D2VJG9_GOSRA; Uncharacterized protein
TrEMBLA0A1U8K6C30.0A0A1U8K6C3_GOSHI; transcription factor bHLH68-like
STRINGGorai.011G073400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-37bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]