PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0516
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 372aa    MW: 40299.6 Da    PI: 5.7946
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0516genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS129.53.9e-401623132152
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL  cA+a+++g+l+++q+lL  l+elas++gd+++Rla + ++AL ++l++s+     + +p + ++++ +    +l  f+evsP++ f + +aN
  Gh_D10G0516 162 EQLLNPCATAITTGNLTRVQHLLYVLNELASSTGDANHRLADHGLRALTHHLSSSSA----STAPVTFASTEPKFFQRSLLKFYEVSPWFAFPNTIAN 255
                  689**************************************************9332....233444443445555556666**************** PP

         GRAS 100 qaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspes 152
                    Il+ +++e    + +Hi+D+++s+G+QWp+Ll+aL+ Rp ++pp +RiT+v++ ++
  Gh_D10G0516 256 ASILQILAQEpdkpRNLHILDIGVSHGVQWPTLLEALSRRPgGPPPVVRITVVAATAE 313
                  **********9998999************************55667*******99553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.074135372IPR005202Transcription factor GRAS
PfamPF035141.3E-37162313IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MTLEESAEPN PSQDHILDWL EDSASLLPSF LDDPYSPGDI SGYQWWDPNH DFGQDLITIG  60
AAAASINSPA IAAAVGNVDA GLVQSDSAVV NPPVPLSSSK RRRPTDSIVP RMSKKSSNGK  120
NDENEDGKAG VEEVVGNKRS AGNKRNKSSG NNGNNKEGRW AEQLLNPCAT AITTGNLTRV  180
QHLLYVLNEL ASSTGDANHR LADHGLRALT HHLSSSSAST APVTFASTEP KFFQRSLLKF  240
YEVSPWFAFP NTIANASILQ ILAQEPDKPR NLHILDIGVS HGVQWPTLLE ALSRRPGGPP  300
PVVRITVVAA TAENNQITDT PFSIGPPGHD FYSRLPDKST REPPNTTPEC TNYQQLTWRD  360
LDSLRTVQTS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-2015831030184Protein SHORT-ROOT
5b3h_E2e-2015831030184Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in epidermal and cortical root cells. {ECO:0000269|PubMed:15961669}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456409.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC81e-115NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2P5SKT50.0A0A2P5SKT5_GOSBA; Uncharacterized protein
STRINGGorai.011G058900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107472834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-71GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]