PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G0512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 606aa MW: 66169.4 Da PI: 7.0921 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4.1e-09 | 491 | 539 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r Rt ++k++w+++l Gh_D10G0512 491 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 539 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.926 | 484 | 543 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-13 | 486 | 546 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-10 | 488 | 541 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.09E-19 | 490 | 540 | No hit | No description |
SuperFamily | SSF46689 | 2.09E-16 | 490 | 549 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-7 | 491 | 539 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 606 aa Download sequence Send to blast |
MEKVVEAEGS DEGKFEETGL ETSNFVLSSP KNVTDPVVYK LVRVDGNGRL VPATDDELME 60 VEGLLENEKR ETHIVADTGQ ALGCISNEVS PSGMPQLESS EGLSQSENTE ADTEKLSAYL 120 EETVPSGAKS SSDDHVTQSG RVGECLKPLD GPLEGGSSTS TGCISSKPDF SKLKGEICLD 180 NLSIKELHEV FKATFGRDTT VKDKLWLKRR IAMGLTNSCD VSATTFVIKD NKLVKKDNED 240 GFNNVNLGAG KEHLAVAVEY NEDLLNNLSS QIDDHQTTSE VRLGNNVVEN NFASEDLAAD 300 QRAAKRVRKP TKRYIEELSE AESKEYSGRS IASTKSIGFR PLSSKAHARP ARNVSLEGRT 360 VITRLDSLGG FGIQVPCVYR IRRSRPRKNV TALLKFHPSG MGMTATFIKK GFDVHGSQMD 420 NGSMNKVLEA KSTPEQAPEQ FVAESKKETT PTDMGQNMGL KYVDPSGDTS DDNVVTVPTA 480 KGGIRRKHHR AWTLSEVMKL VEGVSKYGAG RWSEIKRLAF ASYSYRTSVD LKDKWRNLLK 540 ASFAQTPTDK GANSRKHPSM PIPASILLRV RELAEMQAQA SLPNLSTGKL SACGGRSVNE 600 TRPGYL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 381 | 387 | RRSRPRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.399 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016698008.1 | 0.0 | PREDICTED: uncharacterized protein LOC107913858 | ||||
TrEMBL | A0A1U8KAL8 | 0.0 | A0A1U8KAL8_GOSHI; uncharacterized protein LOC107913858 | ||||
STRING | Gorai.011G058300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4364 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-133 | TRF-like 6 |