PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G0495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 390aa MW: 43677.2 Da PI: 4.61 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 3e-19 | 120 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Gh_D10G0495 120 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 169 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 120 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.092 | 120 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.12E-33 | 120 | 178 | No hit | No description |
SuperFamily | SSF54171 | 4.64E-22 | 120 | 178 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.2E-38 | 120 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-12 | 121 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MCGGAIISDF IPPSRSRRLT ADFLWPDLKK SGLKKGSGKR YSKPVIDLGD DFETDFQEFK 60 DEESDIDDYD VDDVLADVKP FSFNARTKPA SAVSHGSNSE KSMQFDGQAE KCAKRKRKNQ 120 YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DAEARRIRGK KAKVNFPNET 180 PRTSPKHAVK TNSQKPLSKS NLSPVQPNLN QNYNYLNQPE QEYFDTMGFV EEKPSVNQFA 240 YVDPVPTSID AGFNQSDNAP LYFNSDQGSN SINCSDYGWG EQGAKTPEIS SILEASVEGD 300 EFLEDANPSK KLKPSSDNVM PAEDNSAKTL SDELLALDNQ MKYFQMPPFI EGNWDATIDA 360 FLNGDATQDG GNPMDLWNFD DFPTMAEGVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 120 | 177 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 6e-21 | 119 | 179 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.16250 | 0.0 | boll| leaf| ovule| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 87201357 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in seedlings, leaves, flowers, siliques and germinating seeds. {ECO:0000269|PubMed:22020282}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY781117 | 0.0 | AY781117.2 Gossypium hirsutum ethylene-responsive element binding protein ERF2 mRNA, complete cds. | |||
GenBank | KP780200 | 0.0 | KP780200.1 Gossypium hirsutum C-repeat binding factor 17 (CBF17) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016697977.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_016697978.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q9SSA8 | 6e-92 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A1U8K676 | 0.0 | A0A1U8K676_GOSHI; ethylene-responsive transcription factor RAP2-12-like | ||||
STRING | Gorai.011G056300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 3e-85 | related to AP2 12 |