PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G0392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 467aa MW: 52311.2 Da PI: 8.2048 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.3e-17 | 154 | 200 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed +l+++vkq+G + W+ Ia+ + gR +kqc++rw+++l Gh_D10G0392 154 KGQWTDDEDRKLIRLVKQYGVRKWAQIAESLV-GRAGKQCRERWHNHL 200 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 206 | 248 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ +l++a+++ G++ W+ Ia+ ++ gRt++ +k++w+ Gh_D10G0392 206 KDSWSEEEERILIEAHAKVGNR-WAEIAKFIP-GRTENAIKNHWN 248 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.107 | 149 | 204 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-30 | 152 | 247 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-16 | 153 | 202 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-27 | 155 | 208 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.3E-19 | 157 | 214 | No hit | No description |
CDD | cd00167 | 1.31E-15 | 157 | 200 | No hit | No description |
SMART | SM00717 | 9.1E-18 | 205 | 253 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.601 | 205 | 255 | IPR017930 | Myb domain |
CDD | cd00167 | 1.85E-14 | 208 | 251 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 209 | 253 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MEEVRGRRVA FGYGNLLCNN NCKPSPCKSS PPLSAIDRFL WGQTQSLSSH SQAAHQPPYP 60 VQNNVKINKG TVLGSTADAL LRGFSFPSDA IGGYLPRQTN LEESFLDGLF VDGEILALTE 120 DKNPNTEMKA SMKGDFPKGV LKRNKKVASA ALIKGQWTDD EDRKLIRLVK QYGVRKWAQI 180 AESLVGRAGK QCRERWHNHL RPDIKKDSWS EEEERILIEA HAKVGNRWAE IAKFIPGRTE 240 NAIKNHWNAT KRRQNSRKKN KQNDNQNGKP QSSILQDYIR SQNLNTPTNS STTSATPSSS 300 TFSEDLSTQF NYFLPEPSES DDSHPLVVQT YVDELMFMQN FFANNNNTIH PSLDYSQTGN 360 PTEVFKSVHV VDHNLSKSSS TIDCPTFADT RFGFSSSIQE PKTEPRTTYL FSDLYLSRLL 420 NGATTSSFPN GDGYYNGDVN TNLLSGQASS DGRKEMDLIE MVSSSQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-47 | 152 | 254 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-47 | 152 | 254 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016697909.1 | 0.0 | PREDICTED: transcription factor MYB44-like isoform X1 | ||||
TrEMBL | A0A1U8KB89 | 0.0 | A0A1U8KB89_GOSHI; transcription factor MYB44-like isoform X1 | ||||
STRING | Gorai.011G044100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4265 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 6e-64 | myb domain protein 119 |