PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0350
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 306aa    MW: 34079.4 Da    PI: 9.5029
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0350genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.33.2e-1632123187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  +W+++ + +L++a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++ ++ + +  s++p+f++l+a
  Gh_D10G0350  32 CWSEEATSTLVDAWGRRYVELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKTRVSSSNGTLASSWPFFERLDA 123
                  7****************************************99999*************************999998888899******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2630124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MADLTDSVMQ SAVITPPSTT PNTRTLPVRE DCWSEEATST LVDAWGRRYV ELNRGNLRQK  60
DWQDVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKIE KTRVSSSNGT LASSWPFFER  120
LDALIGSNFA AKKLSTSPKI SPKPSPRLSP RIPGSPPVAL PLLLPYRRTP PAPTAIVALP  180
QKRPAVDDGY FKRNYSAVAA AAAAAAAESD EEEGEESEGE ESEGEGEERE GMKRLARALE  240
RFGQVYERVE GEKLRQMVEL EKQRMQFAKD LEVQRMRMFM DTQVQLEKIK RGKRSSGSSG  300
EASSSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.75190.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016697115.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG86e-33ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1U8K3N30.0A0A1U8K3N3_GOSHI; trihelix transcription factor ASIL2-like
STRINGGorai.011G039600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.19e-43sequence-specific DNA binding transcription factors