PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G0344

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 374aa MW: 43432.8 Da PI: 8.3096

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G0344	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.1	3e-31	80	133	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Gh_D10G0344 80 PRLRWTPDLHYSFVRAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 133 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.4E-29	76	134	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.714	76	136	IPR017930	Myb domain
SuperFamily	SSF46689	1.74E-14	79	134	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-22	80	135	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-8	81	132	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MIEMHDEEQG EDVRAMPSRS RKCSSFDLND EAGSERDCIG ETSVEEEEIE NITEGSSSNN 60 NNGNGNDRRR VRQYVRSKLP RLRWTPDLHY SFVRAVERLG GQERATPKLV LQLMNVRGLS 120 IAHVKSHLQM YRSKKLDEAG QVLSQSKRAI QGRGEFGSLL CQAMTTLSPH HRHQQQHFRM 180 ENGGIVLASE SLDGSNTTFK ANFPRHHQFP NSFISKAFGQ ENGFYIQNQI HGTGPIRAMA 240 SRFLEEKRWH PFERISNRWK VNGNMYKDMQ SQSHCFWQRP SSDEDKHEPL TKFSSCRTEF 300 EVIVMLAKLV YIYNEHRLMC FLFEMQWNQD KVLKDGERLP DLQLRLSQRN GKFDEEKNNH 360 CKGTHEISTQ LSLS

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MIEMHDEEQG EDVRAMPSRS RKCSSFDLND EAGSERDCIG ETSVEEEEIE NITEGSSSNN  60
NNGNGNDRRR VRQYVRSKLP RLRWTPDLHY SFVRAVERLG GQERATPKLV LQLMNVRGLS  120
IAHVKSHLQM YRSKKLDEAG QVLSQSKRAI QGRGEFGSLL CQAMTTLSPH HRHQQQHFRM  180
ENGGIVLASE SLDGSNTTFK ANFPRHHQFP NSFISKAFGQ ENGFYIQNQI HGTGPIRAMA  240
SRFLEEKRWH PFERISNRWK VNGNMYKDMQ SQSHCFWQRP SSDEDKHEPL TKFSSCRTEF  300
EVIVMLAKLV YIYNEHRLMC FLFEMQWNQD KVLKDGERLP DLQLRLSQRN GKFDEEKNNH  360
CKGTHEISTQ LSLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.5258	0.0	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY632360	0.0	AY632360.1 Gossypium hirsutum BAC 106I22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016697120.1	0.0	PREDICTED: uncharacterized protein LOC107913157
Refseq	XP_016697121.1	0.0	PREDICTED: uncharacterized protein LOC107913157
Refseq	XP_016697122.1	0.0	PREDICTED: uncharacterized protein LOC107913157
TrEMBL	A0A0D2RGJ1	0.0	A0A0D2RGJ1_GOSRA; Uncharacterized protein
STRING	Gorai.011G039000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-37	G2-like family protein