PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G0254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 18365.7 Da PI: 10.8459 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 2.8e-20 | 8 | 58 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a+++l+g+ Gh_D10G0254 8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 58 69*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-13 | 8 | 57 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-22 | 8 | 66 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.721 | 8 | 65 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-32 | 8 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.94E-28 | 8 | 64 | No hit | No description |
SMART | SM00380 | 5.3E-37 | 8 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 9 | 20 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 31 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MASSREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDG AARSLRGAKA 60 KTNFPTPSSS SSPPPALSLD LNLASHNPHR WALASPHHHH RFAAVGDFLQ AGGIKDMNFG 120 PDPSSSTRPN VLSVSTSPPV TANGNTASFL GIVRRGLPID LNEPPPLWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 8 | 72 | 5 | 70 | ATERF1 |
3gcc_A | 1e-21 | 8 | 72 | 5 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9501 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN003807 | 0.0 | JN003807.1 Gossypium barbadense ethylene-responsive element-binding protein 4 (EREB4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455584.1 | 1e-120 | PREDICTED: ethylene-responsive transcription factor 12 | ||||
Refseq | XP_016730070.1 | 1e-120 | PREDICTED: ethylene-responsive transcription factor 12-like | ||||
Swissprot | Q94ID6 | 5e-48 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A0D2VHI8 | 1e-118 | A0A0D2VHI8_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8MTC0 | 1e-118 | A0A1U8MTC0_GOSHI; ethylene-responsive transcription factor 12-like | ||||
TrEMBL | A0A2P5Q6X1 | 1e-118 | A0A2P5Q6X1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G029700.1 | 1e-119 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 1e-46 | ERF domain protein 12 |