PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G0251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 154aa MW: 16965 Da PI: 7.4258 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 76.5 | 4.3e-24 | 56 | 103 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cqve+C+ad+++ak+yhrrhkvCe+h+kapvv v+g++qrfCqqCs Gh_D10G0251 56 ACQVENCTADMTDAKRYHRRHKVCEFHAKAPVVRVAGIHQRFCQQCSS 103 5*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-23 | 52 | 104 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 17.11 | 54 | 131 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-23 | 55 | 104 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-19 | 57 | 106 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MATSKAEGKR RLKEMAEEEE EEEEEDEDNS TTGDDDKKKK GKRGSSTVVG GSCLPACQVE 60 NCTADMTDAK RYHRRHKVCE FHAKAPVVRV AGIHQRFCQQ CSSIQTGDAN AGSMSYQSLM 120 KQKGAVDGVW PDTTSAVGKV HRNIMEKAQI IKTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-19 | 50 | 105 | 4 | 59 | squamosa promoter binding protein-like 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.13781 | 1e-159 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN795132 | 1e-154 | JN795132.1 Gossypium hirsutum SPL3 mRNA, complete cds. | |||
GenBank | KJ622311 | 1e-154 | KJ622311.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016730055.1 | 4e-70 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q38741 | 1e-30 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A1U8MTA5 | 8e-69 | A0A1U8MTA5_GOSHI; Squamosa promoter-binding-like protein | ||||
STRING | Gorai.011G029400.1 | 3e-45 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM35460 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 7e-25 | squamosa promoter binding protein-like 3 |
Publications ? help Back to Top | |||
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