PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G0146

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 734aa MW: 80803.3 Da PI: 5.6172

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G0146	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1e-19	66	121	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e+lF+++++p+ ++r++L+++lgL+ qVk+WFqN+R++ k Gh_D10G0146 66 RKRYHRHTQRQIQEMEALFKECPHPDDKQRKQLSRELGLDPLQVKFWFQNKRTQLK 121 789999**********************************************9877 PP
2	START	204.2	5.5e-64	254	476	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ela +a++el+++a+++ep+Wv++ + +n+ e+l++f+++ + +++ea+r+ +v +m++++lve+l+d++ qW++ + +a+tl+ Gh_D10G0146 254 ELAVTAMEELIRMAQSGEPLWVTDEnsiDVLNENEYLRIFPRGIGskpfanlgFRSEASREAAVIIMNPVNLVEILMDVN-QWSRVFCgivsRAMTLD 350 57899*******************99**********999*******************************.**99999** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174 v+s+g galq+m+ae+q++splvp R+ +f+Ry++++ +g w++vdvS+d+ ++ p + R++++pSg+li++++ng+skv+wve+v++++ Gh_D10G0146 351 VLSTGiagnynGALQVMTAEFQLPSPLVPtRENYFARYCKRHHDGIWAVVDVSLDNLRHAP----FTRCRRRPSGCLIQELPNGYSKVIWVENVEVDD 444 *******************************************************99....9**************************** PP SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 175 rlphwllrslvksglaegaktwvatlqrqcek 206 r ++ +++ lv ++la+gak+wvatl+rqce+ Gh_D10G0146 445 RGVSDIYKTLVITSLAFGAKRWVATLDRQCER 476 ****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.8E-22	46	121	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.01E-19	50	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.811	63	123	IPR001356	Homeobox domain
SMART	SM00389	6.0E-18	64	127	IPR001356	Homeobox domain
CDD	cd00086	9.70E-18	65	123	No hit	No description
Pfam	PF00046	2.5E-17	66	121	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	98	121	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.838	245	479	IPR002913	START domain
SuperFamily	SSF55961	6.32E-32	246	478	No hit	No description
CDD	cd08875	2.31E-118	249	475	No hit	No description
SMART	SM00234	3.1E-64	254	476	IPR002913	START domain
Pfam	PF01852	1.3E-54	255	476	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	6.1E-5	352	474	IPR023393	START-like domain
SuperFamily	SSF55961	7.0E-22	498	725	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence Send to blast
MFNSDLYENL NMFDMFQRPS DSDQTERNGD DDNNDTKSGT EVDAPSADDD NQGPASSGPS 60 RRRAKRKRYH RHTQRQIQEM EALFKECPHP DDKQRKQLSR ELGLDPLQVK FWFQNKRTQL 120 KAQTERHENG LLKAENEKLR AENHRYKEAL NNISCPTCGG PAALGEMSFE EQHLRLENAR 180 LREEIERISG VTAKYVGKPI GPSFSRFADR APISFGTQPE FLGEYGGPGG GGGLGEVLRP 240 VSVTNEADKP LIVELAVTAM EELIRMAQSG EPLWVTDENS IDVLNENEYL RIFPRGIGSK 300 PFANLGFRSE ASREAAVIIM NPVNLVEILM DVNQWSRVFC GIVSRAMTLD VLSTGIAGNY 360 NGALQVMTAE FQLPSPLVPT RENYFARYCK RHHDGIWAVV DVSLDNLRHA PFTRCRRRPS 420 GCLIQELPNG YSKVIWVENV EVDDRGVSDI YKTLVITSLA FGAKRWVATL DRQCERLASA 480 MANNIPAGDL GVLNSSDGRK SILKLAERMV NSFCTGVGAS TAHAWTTLTG SDEIRVMTRK 540 SIDDPGRPPG IVLSAATSFW VAVPPRKAFN ILRSEKFRSE WDILSNGGVV DEMAHIANGR 600 DPGNCVSLLR VNSANASQSN MLILQESSND ATGSYVIYAP VDFAAMNIVL TGGDPDYVSL 660 LPSGFAILPD CEGPNRGIEI TEIGSGGSLV TLAFQILVDS APNSKISVGS VATVNSLIKC 720 TLERIRTAVM CNDA

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence Send to blast

MFNSDLYENL NMFDMFQRPS DSDQTERNGD DDNNDTKSGT EVDAPSADDD NQGPASSGPS  60
RRRAKRKRYH RHTQRQIQEM EALFKECPHP DDKQRKQLSR ELGLDPLQVK FWFQNKRTQL  120
KAQTERHENG LLKAENEKLR AENHRYKEAL NNISCPTCGG PAALGEMSFE EQHLRLENAR  180
LREEIERISG VTAKYVGKPI GPSFSRFADR APISFGTQPE FLGEYGGPGG GGGLGEVLRP  240
VSVTNEADKP LIVELAVTAM EELIRMAQSG EPLWVTDENS IDVLNENEYL RIFPRGIGSK  300
PFANLGFRSE ASREAAVIIM NPVNLVEILM DVNQWSRVFC GIVSRAMTLD VLSTGIAGNY  360
NGALQVMTAE FQLPSPLVPT RENYFARYCK RHHDGIWAVV DVSLDNLRHA PFTRCRRRPS  420
GCLIQELPNG YSKVIWVENV EVDDRGVSDI YKTLVITSLA FGAKRWVATL DRQCERLASA  480
MANNIPAGDL GVLNSSDGRK SILKLAERMV NSFCTGVGAS TAHAWTTLTG SDEIRVMTRK  540
SIDDPGRPPG IVLSAATSFW VAVPPRKAFN ILRSEKFRSE WDILSNGGVV DEMAHIANGR  600
DPGNCVSLLR VNSANASQSN MLILQESSND ATGSYVIYAP VDFAAMNIVL TGGDPDYVSL  660
LPSGFAILPD CEGPNRGIEI TEIGSGGSLV TLAFQILVDS APNSKISVGS VATVNSLIKC  720
TLERIRTAVM CNDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	66	RRRAKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3762	1e-162	ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269\|PubMed:12505995}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615980	0.0	JX615980.1 Gossypium hirsutum clone NBRI_GE60293 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016723454.1	0.0	PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A1U8MD19	0.0	A0A1U8MD19_GOSHI; homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
STRING	Gorai.011G016200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24824	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]