PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G0117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 548aa MW: 59324.2 Da PI: 7.3978 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 300 | 358 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d +++++tYeg+Hnh+ Gh_D10G0117 300 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDRTILITTYEGNHNHP 358 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-33 | 284 | 360 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-28 | 292 | 360 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 294 | 360 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 299 | 359 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 301 | 358 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MGKGWGLTLD SDPVTSNFFT NKSNSTTVAG GSFLGLKQHH HHHRDMFQFP VSLAGSRDND 60 RRGTSASSSP SDDTKIPVDE VDFFSDKKVR VVDDVKKESI ETPASDLDVN TGLLLLTAGS 120 DQSTVDDGVS SDMEDKRAKN ELAQLQDELK RMNAENQKLK DMLSHVSNNY SALHMHLVTL 180 MQQQQQPPQR NRETQAIQKS KPEEVTPLQI LDLSRPSAAG AEAAETISHS SSEERTRSGT 240 PPSNVEKRVN REESPESESW GPNCKVQNLS SGKPVDQSTE ATMRKARVSV RARSEAPMIT 300 DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG CPVRKQVQRC ADDRTILITT YEGNHNHPLP 360 PAAMAMASTT AAAASMLLSG SMPSADGIMN PNLLARAILP CSSSMATISA SAPFPTVTLD 420 LTHSPNPLQF QRPPPPPTQF QVPFPGQPAP VSAPQLPQVF GQPLYNNNQS KFSGLQLSQE 480 MGSSQLGRQQ QQQHQSPPQQ PPTLADTVSA ATAAITNDPN FTAALAAAIS SIISGGTHPN 540 SSNNNNRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-21 | 286 | 362 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9182 | 0.0 | ovule| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031106 | 0.0 | KF031106.1 Gossypium hirsutum WRKY transcription factor 80 (WRKY80) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016723495.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-168 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2P5QTR0 | 0.0 | A0A2P5QTR0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G012700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-138 | WRKY family protein |