PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0108
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 353aa    MW: 40125 Da    PI: 6.5532
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0108genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-092803142155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yps++++  LA+++gL+++q+ +WF N+R ++
  Gh_D10G0108 280 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 314
                  569*****************************885 PP
2ELK33.87.6e-12234255122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK+ Ll+ YsgyL sLkqEF+
  Gh_D10G0108 234 ELKDKLLQRYSGYLFSLKQEFM 255
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.1E-2195139IPR005540KNOX1
PfamPF037902.3E-2397135IPR005540KNOX1
SMARTSM012561.2E-24145196IPR005541KNOX2
PfamPF037911.3E-20149195IPR005541KNOX2
PfamPF037894.5E-8234255IPR005539ELK domain
SMARTSM011883.8E-6234255IPR005539ELK domain
PROSITE profilePS5121310.737234254IPR005539ELK domain
PROSITE profilePS5007112.989254317IPR001356Homeobox domain
SMARTSM003897.4E-13256321IPR001356Homeobox domain
SuperFamilySSF466891.41E-19256331IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-28259319IPR009057Homeodomain-like
CDDcd000863.49E-12266318No hitNo description
PfamPF059206.3E-17274313IPR008422Homeobox KN domain
PROSITE patternPS000270292315IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEGGSNSTSC MLAFGHNNNT CNGPCHVSMM PSMSSHHHHH HHMDSNNPLF LPLPPTNNQD  60
PNHNSTSGSP SMILNNTGCY FMENNNNDDD GSSSSSMKAK IMSHPHYHRL LAAYVNCQKV  120
GAPPEVVARL EEACATAATV GGTSSTSYMG EDPALDQFME AYCEMLIKYE QELSKPFKEA  180
MVFLQRIECQ FKALTVSSSN SAYGTETFER NGSSEEETDV NNKSFIDPLA EDRELKDKLL  240
QRYSGYLFSL KQEFMKKRKK GKLPKEARQQ LLDWWSRHYK WPYPSESQKL ALAESTGLDQ  300
KQINNWFINQ RKRHWKPSED MQFVVMDGTH NPHYFMDNVI GNPFPMDLSP TFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249258LKQEFMKKRK
2255259KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016723482.10.0PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-148HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A1U8M9H90.0A0A1U8M9H9_GOSHI; homeobox protein SBH1-like
STRINGGorai.011G011700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-132KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]