PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0079
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 759aa    MW: 83275.9 Da    PI: 6.8956
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0079genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-11712757447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      WT eE++ l+++ +++G+  Wk+I +      k+Rt  ++k++w+++
      Gh_D10G0079 712 WTHEEEQALIKGYREYGTQ-WKLILESYRdilKKRTQVDLKDKWRNL 757
                      *****************99.*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.223704759IPR017930Myb domain
SMARTSM007170.0016708759IPR001005SANT/Myb domain
SuperFamilySSF466895.07E-11711757IPR009057Homeodomain-like
CDDcd116602.63E-16712759No hitNo description
Gene3DG3DSA:1.10.10.603.5E-10712757IPR009057Homeodomain-like
PfamPF139214.7E-9712758No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MGDSFPLFND RDPAVLSTLK QYLSQPNNND EDNGDGYATF CFHYKGAILR SIEQRTGNST  60
VPDAVLDSLI LIENLDRRRG VLPSESMKAA FCAVAVHCTV SCLPVSWDNY FDAFHRIWGL  120
RIKSLEESGK SDLISSELVQ WGTVIEAGLW DLETSQRLSS INTRGKALLR IKGYLEEAFR  180
SMSPALSRLA SASTTEPTVD HVASANPNPS TDEGNMDNFV SASAQVPSSP HPCIDERNMD  240
NVVYASAQVP SSPHPCSDEG KMDNVVSASA EASPSPHPCA DKGNVDNVIS SSAQVPSSPH  300
PCTNKKKKIR RASFQARHKP RPRCKQPRGV VITDMEEDQP LCTKNGTPSS FEVNGCLQVA  360
SKTRSAALLD GVTDSPSEAL EVLETVALVM AGKNFHPKGS VEDSNKDKGD PTTSFYPTTH  420
HCTEKGKQIL MVNSQTSGNP NSSHRHCEGP AATADIEEDR ALSTPDIDKL RDALTSSIAD  480
LTATVADPLP KALEVAARLV SFMEAAKSVS TDGAEGDVRK EKGVPAAPMN CNFEQAQAER  540
RAPDKAIRED QDKMARSVPA SSVGHSVEPS QAKEGNETFS RPKKVPKRNL MKRNDAAHTH  600
ERRAPYDGIR EDYNKVDGSV PAPTVNHTAE PSHSKEGNEA VIRPKKVRKC SIMERNDTAH  660
TSEWEDSIDG SDGGTSGCSN RCTLPSPKTN HVSPLKESEP QKQKNRRKTN WWTHEEEQAL  720
IKGYREYGTQ WKLILESYRD ILKKRTQVDL KDKWRNLSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717472.10.0PREDICTED: uncharacterized protein LOC107930355 isoform X1
TrEMBLA0A1U8LSB90.0A0A1U8LSB9_GOSHI; uncharacterized protein LOC107930355 isoform X1
STRINGGorai.011G008700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2214245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-13TRF-like 5