PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G0039

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 998aa MW: 108839 Da PI: 7.5857

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G0039	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.2	2.1e-31	119	175	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +ksrkpylheSRh hAlrR+RgsgGrF Gh_D10G0039 119 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IKSRKPYLHESRHLHALRRARGSGGRF 175 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.0E-36	117	178	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.834	118	178	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.9E-26	120	175	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-22	121	143	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	123	143	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.1E-22	152	175	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 998 aa Download sequence Send to blast
MVLILTNLLL PDDNEVGEQK KHLEPHNQSS SPATGLSPSA ITTRNIPYMT SQHAAAPATY 60 PYPDPYYRSI FAPYDAQPYP PQPCGGSLKG NIPCPYSNVH LQLMGIQQAG VPLPSGAVEE 120 PVFVNAKQYH GILRRRQSRA KAESENKAIK SRKPYLHESR HLHALRRARG SGGRFLNSKK 180 NESKQNDAAS GDKSQSNINL SSNKSESKHA QARGKKGLYE EDDVAKSELI LNEKQQEQQN 240 PSHLSDIRSH RYPGSRRASQ AVENIIHGSN GHLSSFASVS IEAPKGCLKF LLSHCSYSSS 300 PAATGSTRKT ALNRRCHTKT PKSARVSRLP RSKPFCLTKE NSSSASVSNK LNRVKSSKSS 360 KSSTSETPAV FNPVVESHSE ESEELRFTPM AASKIASCSV LDHLAAGNGN LKNRLVDDEK 420 SNTSSSKSKT PPLQASFSPE IQCTATMATS ATTPACYGAG HLISGVTDRR KCRARGVLAV 480 VRSRPNNEKS NTSSSNTITP PLQASFSPEI QSTAMATTPA CYGAGHLLSG VTDKRKCRAR 540 GVLAVAQAGP IDDGILSNGS NDASFEEDCD AGLDNKFSAS ILPSPVEASM HWLLSPCHEN 600 DHDKDDNQHS ASSHGFLEEH KTRLSPSSPL LDLGVSFDWC NFSNDTSDAT NSGTGKSQRS 660 TNSMLISTQG PRFGLSLDCL SSPNVTPYSG LIPPKEEEKH GYNIDGRNSP LSADTLGSEN 720 VMQTPKSDSS LERPVMLSCS RLKDHKRPHH LQSELLSITE DLRMASLSPE SHLSICDTNS 780 SSIKFDRLST PSDSMDLSRF QKILDDRYLW NSNSTFEDVS QSELRISWRE GLASRIFEMD 840 EFDSCRCLSD EEEDLNVDAG NVPTIKNGDE NKEKLHSPLQ CSYAESIATD GGGLAQSTDS 900 DWNLCYKNNL FQGPPTRIGT FVSIIVHGSI ICSYSKPHLA LMELLFGSVS GSGFEPFQQE 960 QFSPSTWLSH NVHMPFPLAP MEIRFSSFTG FGFRNPNI

Sequence ? help Back to Top

Protein Sequence Length: 998 aa Download sequence Send to blast

MVLILTNLLL PDDNEVGEQK KHLEPHNQSS SPATGLSPSA ITTRNIPYMT SQHAAAPATY  60
PYPDPYYRSI FAPYDAQPYP PQPCGGSLKG NIPCPYSNVH LQLMGIQQAG VPLPSGAVEE  120
PVFVNAKQYH GILRRRQSRA KAESENKAIK SRKPYLHESR HLHALRRARG SGGRFLNSKK  180
NESKQNDAAS GDKSQSNINL SSNKSESKHA QARGKKGLYE EDDVAKSELI LNEKQQEQQN  240
PSHLSDIRSH RYPGSRRASQ AVENIIHGSN GHLSSFASVS IEAPKGCLKF LLSHCSYSSS  300
PAATGSTRKT ALNRRCHTKT PKSARVSRLP RSKPFCLTKE NSSSASVSNK LNRVKSSKSS  360
KSSTSETPAV FNPVVESHSE ESEELRFTPM AASKIASCSV LDHLAAGNGN LKNRLVDDEK  420
SNTSSSKSKT PPLQASFSPE IQCTATMATS ATTPACYGAG HLISGVTDRR KCRARGVLAV  480
VRSRPNNEKS NTSSSNTITP PLQASFSPEI QSTAMATTPA CYGAGHLLSG VTDKRKCRAR  540
GVLAVAQAGP IDDGILSNGS NDASFEEDCD AGLDNKFSAS ILPSPVEASM HWLLSPCHEN  600
DHDKDDNQHS ASSHGFLEEH KTRLSPSSPL LDLGVSFDWC NFSNDTSDAT NSGTGKSQRS  660
TNSMLISTQG PRFGLSLDCL SSPNVTPYSG LIPPKEEEKH GYNIDGRNSP LSADTLGSEN  720
VMQTPKSDSS LERPVMLSCS RLKDHKRPHH LQSELLSITE DLRMASLSPE SHLSICDTNS  780
SSIKFDRLST PSDSMDLSRF QKILDDRYLW NSNSTFEDVS QSELRISWRE GLASRIFEMD  840
EFDSCRCLSD EEEDLNVDAG NVPTIKNGDE NKEKLHSPLQ CSYAESIATD GGGLAQSTDS  900
DWNLCYKNNL FQGPPTRIGT FVSIIVHGSI ICSYSKPHLA LMELLFGSVS GSGFEPFQQE  960
QFSPSTWLSH NVHMPFPLAP MEIRFSSFTG FGFRNPNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-19	118	183	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22069	0.0	boll

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM472177	2e-49	AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016717432.1	0.0	PREDICTED: uncharacterized protein LOC107930315 isoform X2
TrEMBL	A0A2P5Q146	0.0	A0A2P5Q146_GOSBA; Uncharacterized protein
STRING	Gorai.011G004300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	3e-49	nuclear factor Y, subunit A7