PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G0010

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 399aa MW: 44483.9 Da PI: 6.07

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G0010	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.7	1.3e-33	193	247	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl Gh_D10G0010 193 KPRMRWTPELHERFVEAVNKLHGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 247 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.732	190	250	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-18	191	247	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-31	193	248	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-25	193	248	IPR006447	Myb domain, plants
Pfam	PF00249	7.6E-10	195	246	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-22	284	331	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MAGECSSRLS FPFNSPRSDA KNASSSSSVF CTSLYLSSSS TSETQRQLGN LPFLPHPPTR 60 HQFISSVDSS KSPAMFSEDL NNPYNEGHSE IIMKDFLNLP ADASSDGCFY GMHCESDDFG 120 ITTEQLELQF LSDELDIAIT DHGENPRLDE IYETCPPSSA KPTVELKCNQ NTNSVSPTID 180 GPAMSGAAAA VLKPRMRWTP ELHERFVEAV NKLHGPEKAT PKGVLKLMNV EGLTIYHVKS 240 HLQKYRLAKY MPEKKEERKT SSSSEEKKPA SSTNESDGKK RGGMHITEAL RMQMEVQKQL 300 HEQLELQRSL QLRIEEHARY LQKMLEEQQK AGNALIPNSN SELPSKIASE TEPCESKTES 360 PTSLPSKHKA PNVEDCKLKS SPKRLRMDEA EAKVENPEQ

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MAGECSSRLS FPFNSPRSDA KNASSSSSVF CTSLYLSSSS TSETQRQLGN LPFLPHPPTR  60
HQFISSVDSS KSPAMFSEDL NNPYNEGHSE IIMKDFLNLP ADASSDGCFY GMHCESDDFG  120
ITTEQLELQF LSDELDIAIT DHGENPRLDE IYETCPPSSA KPTVELKCNQ NTNSVSPTID  180
GPAMSGAAAA VLKPRMRWTP ELHERFVEAV NKLHGPEKAT PKGVLKLMNV EGLTIYHVKS  240
HLQKYRLAKY MPEKKEERKT SSSSEEKKPA SSTNESDGKK RGGMHITEAL RMQMEVQKQL  300
HEQLELQRSL QLRIEEHARY LQKMLEEQQK AGNALIPNSN SELPSKIASE TEPCESKTES  360
PTSLPSKHKA PNVEDCKLKS SPKRLRMDEA EAKVENPEQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-26	193	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-26	193	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-26	193	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-26	193	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-26	193	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-26	193	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-26	193	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-26	193	250	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.16559	0.0	ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016717482.1	0.0	PREDICTED: uncharacterized protein LOC107930364 isoform X1
Swissprot	Q949U2	1e-128	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A1U8LSC9	0.0	A0A1U8LSC9_GOSHI; uncharacterized protein LOC107930364 isoform X1
STRING	Gorai.011G001500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	4e-96	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]