PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G2492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 368aa MW: 40623.1 Da PI: 4.3893 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.9e-19 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Gh_D09G2492 43 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 92 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.88E-32 | 42 | 99 | No hit | No description |
SuperFamily | SSF54171 | 3.33E-19 | 43 | 100 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-27 | 43 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 43 | 106 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.7E-14 | 43 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 43 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-8 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-8 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MGRKRKVVTD MATEDETMGW DEMVKQAAAA TAGLSGIRRA RKRFVGVRQR PSGRWVAEIK 60 DTIQKIRVWL GTFDTAEEAA RAYDEAACLL RGANTRTNFW PCSSSSMNST PALSSKISNR 120 LLQRIQAKNN SCFPLPTPSP PPVSVSVNAC VSQQPLLQEV EDDNNHGFLD VLEDFSMSND 180 ELFNATSVES CLTDNEDCST RELDWSSPSN DDDLGDEGTL DFQFVDEIGF GPSYSCSPFQ 240 LAEELEAPPM AAEILADEHS MISYERKFSA SLYAFNGIPE LLKRKLGSEA AMAERRSEQL 300 SALRNACKNN NKREKQDDLG PKQEESPQSS FYSSSSMDMV EPSSSGNHDG ESLWSSLDLP 360 PIIALLTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-14 | 33 | 99 | 4 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016673349.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A2P5RJY7 | 0.0 | A0A2P5RJY7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G013600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18279 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-22 | related to AP2 11 |