PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2453
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 721aa    MW: 79591.1 Da    PI: 7.0878
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2453genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07230250526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C +far G+Ck G +C+F Hg
  Gh_D09G2453 230 PCLYFAR-GFCKNGTSCRFLHG 250
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-4227251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5228250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4229251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61230252IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-5230250IPR000571Zinc finger, CCCH-type
PROSITE profilePS501029.03358442IPR000504RNA recognition motif domain
SMARTSM003603.1E-4359437IPR000504RNA recognition motif domain
CDDcd124581.04E-37360437No hitNo description
Gene3DG3DSA:3.30.70.3303.5E-8367447IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.26E-9370456IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MDSYEATRIV FSRIQNLDPE NASKIMGYLL IQDHGEKEMI RLAFGPEAHI HSLILKAKSH  60
LGLSISNPPT PSTPSSPSPF SSRPSPLSIP SSSSRLTKGL EIPNPSSPST TTWPPLNHCP  120
ISPSSTSSLS YASIVNGSSN TANGSGSLSS VPSCVNTCND NELIDDYQFQ DHLSFLNDSK  180
PEDLFSPRLD LAMSTTPSGY ADSLLHRRSF SVPGLCFGAE DVNSGIGWKP CLYFARGFCK  240
NGTSCRFLHG DCADAAALVG SPSKLNELEQ YQELLRSKAL QQQQHQQKLA SASQLMSGAS  300
FQYSKCVNLL LQQQNDSHRS AMAALMMGDE LHKFGRCRAE RNDFSAMGLG AAINPGSRQI  360
YLTFPADSTF KEEDVSNYFR QFPSGFYSIY GPVQDVRIPY QQKRMFGFVT FVYPETVKLI  420
LAKGNPHFVC DSRVLVKPYK EKGKVQEKKQ QQQSERGEYS ACSSPSGVDS REPFDLHLGS  480
RMFYNTQEML LRRKLEEQAD LQQAIELQGR RLMNLQLLDL KNHHHSQFQH GFSTASPVPS  540
PTVSRTPNNQ ALIFPVDGID QEFPQENGGC PISAVSELAA AINDDKQLED YKNDNGNSST  600
KGKANTEESD LPESLDHILP DNLFASPKKS ASDHFTVFST SSAEAVEADD KTGTPPTTSC  660
SNSNPSPANA SGLNMASLKT YLLQMPRNHW HVVSQQWRKI DFARWQLSKH IQGRLNPKKA  720
V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.204481e-151boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9642294e-41JX964229.1 Gossypium hirsutum clone NBRI_TRANS-498 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485359.10.0PREDICTED: zinc finger CCCH domain-containing protein 53
RefseqXP_016671721.10.0PREDICTED: zinc finger CCCH domain-containing protein 53-like
TrEMBLA0A0D2S2750.0A0A0D2S275_GOSRA; Uncharacterized protein
STRINGGorai.006G126400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM269734