PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2413
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 175aa    MW: 19928.6 Da    PI: 10.5099
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2413genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-1498143247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++ + ++lG+g+W+ I++ +  +Rt+ q+ s+ qky
      Gh_D09G2413  98 KPWTEEEHRTFLAGLRKLGKGDWRGISKNFVPTRTPTQVASHAQKY 143
                      58*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.65492148IPR017930Myb domain
SuperFamilySSF466891.1E-1794148IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-1795147IPR006447Myb domain, plants
SMARTSM007171.9E-1196146IPR001005SANT/Myb domain
PfamPF002491.4E-1298143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-1398142IPR009057Homeodomain-like
CDDcd001677.77E-1199144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVKEAGRKCS HCGHNGHNSR TCYVHNSRCC NGKGGCVKLF GVKIGAMDQK RENVMKKSFS  60
MGNLQSHAEN NNDDDGHFSD GQIQSKKHKA SHERKRGKPW TEEEHRTFLA GLRKLGKGDW  120
RGISKNFVPT RTPTQVASHA QKYFLRQAGT DKKKRRPSLF DMEFQEFGSV RYCLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151155KKKRR
2151156KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016718745.11e-125PREDICTED: uncharacterized protein LOC107931377
SwissprotQ9FKF91e-59M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A0D2QHP91e-124A0A0D2QHP9_GOSRA; Uncharacterized protein
TrEMBLA0A1U8LVZ11e-123A0A1U8LVZ1_GOSHI; uncharacterized protein LOC107931377
STRINGGorai.006G274300.11e-125(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.16e-62MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]