PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2362
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 27922.7 Da    PI: 8.8367
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2362genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-31757151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Gh_D09G2362  7 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 57
                 79***********************************************96 PP
2K-box93.82.9e-31771725100
        K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  ++++  ++++++++qe+ kLk+++e Lqr+qR+llGedL++L+ keL qLe+qLe slk+iRs+K + +l+q+++l ++ek l ++nk+Lr+klee
  Gh_D09G2362  77 DNSRSISETQQNSYQEYLKLKARVEVLQRSQRNLLGEDLGPLDSKELDQLEHQLEASLKQIRSTKVQAMLDQLHDLHNREKLLVDANKSLRRKLEE 172
                  55556677899**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004041.2E-30121IPR002100Transcription factor, MADS-box
SMARTSM004326.5E-36158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.829159IPR002100Transcription factor, MADS-box
CDDcd002651.06E-42277No hitNo description
SuperFamilySSF554551.57E-31277IPR002100Transcription factor, MADS-box
PfamPF003191.6E-26855IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-302136IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-303657IPR002100Transcription factor, MADS-box
PfamPF014869.9E-2784170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.62486176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRVVLKRIE NKINRQVTFA KRRNGLLKKA YELSVLCDAE VALIVFSNRG KLYEFCSSPS  60
MTKTLEKYQK CSYSTLDNSR SISETQQNSY QEYLKLKARV EVLQRSQRNL LGEDLGPLDS  120
KELDQLEHQL EASLKQIRST KVQAMLDQLH DLHNREKLLV DANKSLRRKL EELSTQVPQG  180
LAWDNIGGPS IPPYNRLTAA QSEAFFHPLG ANCSSQIGYS NDVVSDEMNA AVHSQNVNGY  240
FPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-287917010101Developmental protein SEPALLATA 3
4ox0_B1e-287917010101Developmental protein SEPALLATA 3
4ox0_C1e-287917010101Developmental protein SEPALLATA 3
4ox0_D1e-287917010101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556430.0KC155643.1 Gossypium hirsutum MADS box protein MADS48 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487593.11e-178PREDICTED: MADS-box protein CMB1-like
SwissprotQ8LLR21e-110MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2P5Q5X40.0A0A2P5Q5X4_GOSBA; Uncharacterized protein
STRINGGorai.006G268400.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.13e-97MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]