PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G2332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 293aa MW: 32676.2 Da PI: 6.1011 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.1 | 5.8e-31 | 151 | 210 | 1 | 59 |
---SS-EEEEEEE--TT-SS-.EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefp.rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++p rsYYrCts+gC vkk+vers +d++++++tYeg+H+h+ Gh_D09G2332 151 LDDGYRWRKYGQKAVKNSPYPsRSYYRCTSSGCGVKKRVERSFDDTTIIITTYEGKHTHP 210 59******************889************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-32 | 136 | 212 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-27 | 144 | 212 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.953 | 146 | 212 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-35 | 151 | 211 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-24 | 152 | 210 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MRFSDENSTA AAESGGGDGG GDKWDSLGFM ELLGIHQDFF ESFIQQPALI LSPPLLQLDT 60 EQKPQAGLQL QPYSTVSEIS ECLNNPPATP NSSSISSLSN EAANINEQST NAGDDEEQDK 120 TKKQLKHKKK NQKKQKEPRF AFITKTEIDH LDDGYRWRKY GQKAVKNSPY PSRSYYRCTS 180 SGCGVKKRVE RSFDDTTIII TTYEGKHTHP CPVQPRGSGF GNIGLTPSFM VHHQYQDQQQ 240 EEVEQPYMYA SLSPLNPCFS PNGSSSASLI RDHGLLQDIV LPIKTRNEAN EQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-26 | 139 | 212 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3193 | 0.0 | ovule |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 73865880 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM438472 | 0.0 | KM438472.1 Gossypium aridum WRKY78 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016723159.1 | 0.0 | PREDICTED: probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 1e-50 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A1U8MC75 | 0.0 | A0A1U8MC75_GOSHI; probable WRKY transcription factor 23 | ||||
STRING | Gorai.006G265200.1 | 1e-176 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5624 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 9e-45 | WRKY DNA-binding protein 48 |
Publications ? help Back to Top | |||
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