PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2285
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 262aa    MW: 29923.6 Da    PI: 8.9511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2285genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.3e-2194142355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+k+++g
  Gh_D09G2285  94 YRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTYNTAEEAARAYDEAAKRIRG 142
                  9*******.**********94....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.0E-3793156IPR001471AP2/ERF domain
PROSITE profilePS5103224.05293150IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2393151IPR016177DNA-binding domain
PRINTSPR003671.3E-1194105IPR001471AP2/ERF domain
PfamPF008471.9E-1494142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3294151IPR001471AP2/ERF domain
CDDcd000187.28E-3494152No hitNo description
PRINTSPR003671.3E-11116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MCGGAIISDF VAPKYDRKLT GDDLWSELDI FSDLLGFDNN GKSFVNHQFH NNNNNKLINP  60
KDNQLNKERS ETIQKTSQVT KKVEKTQRTR KNFYRGIRQR PWGKWAAEIR DPQKGVRVWL  120
GTYNTAEEAA RAYDEAAKRI RGDKAKLNFP QTPTKNQAAS PALTLLPPAK KRCIVPELTQ  180
PSFQTDSPPY PMGLGYGRSE DYKPIEVVES ELELKEQIWS LESFLGLETN HETMTQLSGN  240
GGTDSLELWT LDDLVTQYKQ RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2394150360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7811190.0AY781119.1 Gossypium hirsutum ethylene-responsive element binding protein ERF6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314192.10.0ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A1U8LHM00.0A0A1U8LHM0_GOSHI; ethylene-responsive transcription factor RAP2-3-like
STRINGGorai.006G260300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.16e-48ethylene-responsive element binding protein