PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G2062
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 758aa    MW: 82249.6 Da    PI: 6.2335
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G2062genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.47.7e-1293887462374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +lLl+cAeavs++++e a+++L +ls+l++p g++ qR+aayf eA++arl++s+ +++  lp+ + s  ++++ ++a+++f+ +sP++kfsh+taN
  Gh_D09G2062 388 LTLLLQCAEAVSANNFEDANRMLLELSQLSTPFGTSAQRVAAYFSEAISARLVSSCLGICGGLPSIPPS--HTQKMVSAFQVFNGISPFVKFSHFTAN 483
                  579************************************************************999887..5899999******************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  qaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va+++ +le+e+L+v+
  Gh_D09G2062 484 QAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGLGT----SLEALEATGKRLSDFADKLGIPFEFCP-VADKVGNLEPERLNVS 576
                  **************************************************....9**************************.7*************** PP

         GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  + Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE++ll++ei+
  Gh_D09G2062 577 KTEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-GGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIR 667
                  **********9..999999999999....**********************.789******************************************* PP

         GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  nv+a  g +r  ++ ++++Wre+l+++GF+p++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  Gh_D09G2062 668 NVLALGGPSRSSEEVKFHNWREKLQQSGFRPISLAGNAATQATLLLGMFPSDGYTLVEDNGALKLGWKDLCLLTASAWR 746
                  ******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.165361726IPR005202Transcription factor GRAS
PfamPF035142.7E-126388746IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MLMAACDLVG ENGGINGRNS NDESPMRSTM RKRMASEVAD YHRFPRRTQF VSDNNMACSF  60
MAATGASNNP NSLFNYSTMN MDNVNTVVPS ANFAALTSAG PAFLSTTASN FSCVDAVGTN  120
SPQPPAVCGF SGLPLFPPTE RNRNTAVASA AVTATSVNTT VPVSLAPISN SMDGSSATAW  180
IDGVIRDLIH TSANVSIPQL IHNVREIIYP CNPNLAALLE YRLRSLMDPL ERRRKEAAAP  240
PLHLPEVSLA RHNSQQQQQQ GSSGLTLNLD SAIDSLPNYS LTEPCAMNQY LSWGITPLPI  300
SSNNQVSSSP SAITPPVPSL NQHHRAQEQP LVQENTSPVE KTTASTATVG TTTTAPTSTV  360
ETVQACNGRD RKEELRQQKR DEEGLHLLTL LLQCAEAVSA NNFEDANRML LELSQLSTPF  420
GTSAQRVAAY FSEAISARLV SSCLGICGGL PSIPPSHTQK MVSAFQVFNG ISPFVKFSHF  480
TANQAIQEAF EREERVHIID LDIMQGLQWP GLFHILASRP GGPPHVRLTG LGTSLEALEA  540
TGKRLSDFAD KLGIPFEFCP VADKVGNLEP ERLNVSKTEA VAVHWLQHSL YDVTGSDTNT  600
LWLLQRLAPK VVTVVEQDLS HGGSFLGRFV EAIHYYSALF DSLGASYGEE SEERHVVEQQ  660
LLSKEIRNVL ALGGPSRSSE EVKFHNWREK LQQSGFRPIS LAGNAATQAT LLLGMFPSDG  720
YTLVEDNGAL KLGWKDLCLL TASAWRPFHA TTTTTLHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03717473380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.21370.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730939.10.0PREDICTED: protein SCARECROW-like isoform X1
RefseqXP_016730940.10.0PREDICTED: protein SCARECROW-like isoform X2
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A1U8MZD90.0A0A1U8MZD9_GOSHI; protein SCARECROW-like isoform X1
STRINGGorai.006G236200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81642640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein