PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G1951

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 244aa MW: 27097.7 Da PI: 5.3551

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1951	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.8	7.7e-31	39	89	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQ Gh_D09G1951 39 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 89 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.242	36	96	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-29	36	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.47E-14	38	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-21	39	90	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-7	41	89	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-26	128	174	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MYSAIRSLPL NGSVGDYQGS FDGTNLPSDA CLVLTTDPKP RLRWTAELHE RFVDAVTQLG 60 GPDKATPKTI MRTMGVKGLT LYHLKSHLQV CNNCHIFNAS CVAESQDTGS STTSSSKLVA 120 QDLNDGYQVT EALRVQMEVQ RRLHEQLEVQ RRLQLRIEAQ SKYLQTILEK ACKALSDHVA 180 ASAGLEAARE ELSELGIKIS NDFQGMVPFD NIKLPSLPEL PAALENKATT TDWYYEEETQ 240 ALVW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	39	89	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	39	89	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	39	89	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	39	89	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	39	89	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	39	89	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	39	89	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	39	89	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.6104	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589523	2e-96	JX589523.1 Gossypium hirsutum clone NBRI_GE24244 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012486916.1	1e-164	PREDICTED: myb family transcription factor APL-like
Swissprot	Q94A57	1e-117	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A0D2NWT5	1e-163	A0A0D2NWT5_GOSRA; Uncharacterized protein
STRING	Gorai.006G222400.1	1e-164	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-111	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]