PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1900
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 295aa    MW: 33274.4 Da    PI: 9.2537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1900genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.4e-14100151155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Gh_D09G1900 100 QRMTHIAVERNRRKQMNEHLTVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 151
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.10E-1298155No hitNo description
SuperFamilySSF474599.03E-1798172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.14299150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14100168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-11100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MALETLSSNE LLNFIIYDTI FATPCSSHHH ESLVTDFSME NSFSSLEQAR NSGNALSCLP  60
MVTPKCRSKG MERSNLAVQG RKKRRRKPRV CKNKAEAETQ RMTHIAVERN RRKQMNEHLT  120
VLRSLMPESY VQRGDQASIV GGAIEFVKEL EHLLQTLEAQ KLRVETNMSL LSSSSSPPFA  180
QFFTHPQYTW SQIPNKHTPK TKASIADIEV TLIQTHANLR ILTRKVHKQL PKLVAALHSL  240
YLSILHLNVT SMDTLVLYSI SVKVEEGCQL ISVDNIAGAV HNMLRIIEEE ATTLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RKKRRRK
28087RKKRRRKP
38186KKRRRK
4100111RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670609.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ9C7T48e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1U8I4G00.0A0A1U8I4G0_GOSHI; transcription factor bHLH71-like
STRINGGorai.006G217200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2441734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]