PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D09G1812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 337aa MW: 37848.1 Da PI: 5.9516 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 123 | 173 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ kl+g Gh_D09G1812 123 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 173 59********.**********72....45*************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.68E-33 | 123 | 180 | No hit | No description |
PROSITE profile | PS51032 | 23.841 | 124 | 181 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-39 | 124 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 124 | 173 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-30 | 124 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 124 | 181 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-10 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 337 aa Download sequence Send to blast |
MDHSPVPSIK YTEHRYQTKL LSPLLDVSLV KQPEMKRRIV RILVTDADAT DSSGDEDDDY 60 EEHASQLRCR NRVKKYVNEI TIESTLCPAQ NGRVSRSKTS LSKSSRKRPA MKVKATMKAP 120 ADKKFRGVRQ RPWGKWAAEI RDPLRRVRLW LGTYDTAEEA AMVYDNAAIK LRGPDALTNF 180 SNPKLQNKNS QKPLSSSDYH SGEESHNTNL CSPTSVLRCL SLSADEGDSQ SVKESRELRS 240 EPGAVVDDSC FTSGEKFSEF SDQSSLFPSD IFSSVPELFD DNTSFHDCFL KDDFSNGFLS 300 SGGDFEFGFG GFSRWQRVDD HFQDIGDLFG SDPLVAI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 123 | 180 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.14504 | 0.0 | ovule| root |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 109838422 | 0.0 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016670712.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A1U8HXG4 | 0.0 | A0A1U8HXG4_GOSHI; ethylene-responsive transcription factor CRF1-like | ||||
STRING | Gorai.006G208200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23750.2 | 6e-55 | cytokinin response factor 2 |