 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_D09G1792 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
Dof |
| Protein Properties |
Length: 252aa MW: 28216.1 Da PI: 9.2269 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D09G1792 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 120.1 | 8.2e-38 | 37 | 98 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
k++al+cprC+s+ntkfCyynnysl qPryfCk+CrryWt+GG+lrn+PvGg +rk k+sss
Gh_D09G1792 37 KQQALNCPRCNSMNTKFCYYNNYSLRQPRYFCKTCRRYWTEGGSLRNIPVGGCSRKTKRSSS 98
7899******************************************************9875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MDFVVSQIKK FIRKEIVTNA CSKPADLERK AAAKPQKQQA LNCPRCNSMN TKFCYYNNYS 60
LRQPRYFCKT CRRYWTEGGS LRNIPVGGCS RKTKRSSSSS KKLPDLVNNP KIHGGQDLNL 120
AYPVSEVYTT SMSEFVKVPN SSVENSKKEI PSSLFPRCHV SALELVTGMS SKGWNPFIPM 180
PVPDPNTVYT PGFPLQEYKP TLNSCVDGAE EINGRLLFPF QDLKQTTDNE DNKEQGDSSA 240
GFWNGMLGGA SW
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX618042 | 1e-152 | JX618042.1 Gossypium hirsutum clone NBRI_GE63365 microsatellite sequence. |
