PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G1771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 160aa MW: 18570.6 Da PI: 8.6916 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1.1e-08 | 112 | 153 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++i +++ L++l+P + +k +Ka +L + ++Y++sLq Gh_D09G1771 112 KVRREKISERMKYLQDLVPGC----NKITDKAGMLNEIINYVQSLQ 153 78*******************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00025 | 1.3E-10 | 65 | 113 | IPR006689 | Small GTPase superfamily, ARF/SAR type |
Gene3D | G3DSA:3.40.50.300 | 9.6E-5 | 73 | 108 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00328 | 1.7E-13 | 75 | 99 | IPR006689 | Small GTPase superfamily, ARF/SAR type |
PROSITE profile | PS50888 | 13.186 | 102 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PRINTS | PR00328 | 1.7E-13 | 102 | 127 | IPR006689 | Small GTPase superfamily, ARF/SAR type |
SuperFamily | SSF47459 | 3.93E-13 | 103 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-5 | 108 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-13 | 109 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.29E-8 | 111 | 157 | No hit | No description |
Pfam | PF00010 | 3.4E-6 | 112 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005525 | Molecular Function | GTP binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MVQVIRVVPY SAVQLFAYET YKTRETLGQW CVVFISFGVK EMDLGEDVDA VDGGSRLGEC 60 KFEMTKCKSQ QLHQPTQYPT LEELSIGMIK FKAFDLGCHQ IARRVWKDYY AKVRREKISE 120 RMKYLQDLVP GCNKITDKAG MLNEIINYVQ SLQRQVEVKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.11680 | 3e-67 | boll |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109875593 | 3e-67 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX585276 | 4e-59 | JX585276.1 Gossypium hirsutum clone NBRI_GE18804 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491357.1 | 3e-60 | PREDICTED: GTP-binding protein SAR1-like isoform X1 | ||||
Refseq | XP_012491366.1 | 2e-60 | PREDICTED: GTP-binding protein SAR1-like isoform X2 | ||||
Refseq | XP_012491372.1 | 2e-60 | PREDICTED: GTP-binding protein SAR1-like isoform X2 | ||||
Refseq | XP_012491379.1 | 2e-60 | PREDICTED: GTP-binding protein SAR1-like isoform X2 | ||||
TrEMBL | A0A2P5RGR3 | 1e-66 | A0A2P5RGR3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G193500.1 | 2e-59 | (Gossypium raimondii) | ||||
STRING | Gorai.001G223600.1 | 2e-59 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16325 | 3 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 4e-23 | cryptochrome-interacting basic-helix-loop-helix 1 |