PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1715
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 610aa    MW: 66952.7 Da    PI: 6.675
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1715genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.33.4e-1112426102374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +++++e+A a+++g++  a+++L+rl + ++ +g++ qR +a+++ AL++r+++    + +  p+ e     s+e++aa++l++++sP++k+++l+aN
  Gh_D09G1715 242 KQTIMEAASAIAEGKTDVANEILTRLAQDSNAKGNSEQRFVACMLLALKSRINS----VENPPPVAEL---FSKEHAAATQLLYDLSPCFKLGFLAAN 332
                  5789*************************************************9....4443343333...49************************* PP

         GRAS 100 qaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   aIl+a+  +   +++HiiDfdi++G Q+++Ll+aL++R +g+p  ++iT++++  +g  e+++ ++++L+++Ae++gv ++fnv+++ +l+dl+ e+
  Gh_D09G1715 333 LAILDATRDQpscNKLHIIDFDIGKGRQYINLLHALSERGSGKPaLVKITAIAD--NGGDERVKMVEDKLSEIAERFGVCMKFNVVASPKLSDLSRES 428
                  ********9988899*************************7766589*******..779**************************8888********* PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  L ++p+E la+n++++l+r++desvs+e++rde+L+ vk+l P vv++ve+e+++n+++F  r+ ea  yy alfds+e+++pre++er++vE+  l 
  Gh_D09G1715 429 LGCEPDEPLAINFAFNLYRMPDESVSVENQRDELLRRVKGLAPSVVTLVEHEMNTNTAPFPSRVGEASAYYGALFDSIETSVPREKSERVMVEEG-LC 525
                  ***********************************************************************************************.99 PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r+i n v+ceg+er+er+e ++kWr+r+++aGF+  plse++a+++++ l+  +  + g++v+ee+g +++gW++r+L+++SaWr
  Gh_D09G1715 526 RKIANSVSCEGRERVERCEVFGKWRARMSMAGFELKPLSESVAESMRARLNSGNrvNPGFTVKEENGGVCFGWMGRTLTVASAWR 610
                  ************************************************9998777789**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.739215588IPR005202Transcription factor GRAS
PfamPF035141.2E-108242610IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MASGHSTGGP DFYAGIEGRS VASNQTTAPY RTRIPGIFMD PASQIVNRAV PNLVGKRTLA  60
DFQKQQLHYN HPVRNDLLYL RSVKPRTTYQ HSSTISPMDF SSNLSPDVMG NFSSPSSCIS  120
QRYYGLPLLQ HPRPQQAMNP GFSSVQQMSP IQMRVVHPQD PERKMMNRLQ ELEKQLLDDE  180
NDDEGDAVSV ISNTKSEWSE TIQNLISSGS PIQPVAPSST SSTTSSSSST TSVVSPAPTS  240
SKQTIMEAAS AIAEGKTDVA NEILTRLAQD SNAKGNSEQR FVACMLLALK SRINSVENPP  300
PVAELFSKEH AAATQLLYDL SPCFKLGFLA ANLAILDATR DQPSCNKLHI IDFDIGKGRQ  360
YINLLHALSE RGSGKPALVK ITAIADNGGD ERVKMVEDKL SEIAERFGVC MKFNVVASPK  420
LSDLSRESLG CEPDEPLAIN FAFNLYRMPD ESVSVENQRD ELLRRVKGLA PSVVTLVEHE  480
MNTNTAPFPS RVGEASAYYG ALFDSIETSV PREKSERVMV EEGLCRKIAN SVSCEGRERV  540
ERCEVFGKWR ARMSMAGFEL KPLSESVAES MRARLNSGNR VNPGFTVKEE NGGVCFGWMG  600
RTLTVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-392436106375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.100080.0boll| ovule| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670756.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1U8HXM10.0A0A1U8HXM1_GOSHI; scarecrow-like protein 8
STRINGGorai.006G198300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-166SCARECROW-like 8