PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D09G1659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 27223.3 Da PI: 9.3898 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.5e-13 | 73 | 121 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +g+W++ Ed++l d++ ++G g+W++ ++ + R++k+c++rw +yl Gh_D09G1659 73 KGAWSKLEDQKLTDYILKHGEGCWRSLPQAAAgLLRCGKSCRLRWVNYL 121 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 127 | 169 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+ Gh_D09G1659 127 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNHWN 169 89********************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-21 | 64 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.532 | 68 | 121 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.49E-26 | 71 | 168 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-10 | 72 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-11 | 73 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.29E-8 | 75 | 121 | No hit | No description |
PROSITE profile | PS51294 | 26.751 | 122 | 176 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 124 | 176 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-15 | 126 | 174 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 127 | 169 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.64E-11 | 129 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MQSVTNPTAG SRKSSHGSWG QTQTLVYIDI LLVSLFISPS LHLLWSVAFA CLNSLPLGLQ 60 MRKPCCEKKD TNKGAWSKLE DQKLTDYILK HGEGCWRSLP QAAAGLLRCG KSCRLRWVNY 120 LRPDLKRGNF GEDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNHWNI HLRKKLLMMG 180 IDPNNRRSLL SPTLTKSNAS NDSSSACQPF NPATASETIS STCLPDLNLD LTIAPPLSHQ 240 NLALN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-28 | 70 | 176 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ459165 | 2e-65 | AJ459165.1 Gossypium hirsutum partial myb135 gene, clone pGhMYB135. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016670915.1 | 1e-169 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 8e-74 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A1U8HY44 | 1e-168 | A0A1U8HY44_GOSHI; myb-related protein 308-like | ||||
STRING | Gorai.006G192400.1 | 1e-164 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-72 | myb domain protein 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|