PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G1639 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 429aa MW: 48302.7 Da PI: 9.2579 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5e-06 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Gh_D09G1639 56 YVCEICNQGFQRDQNLQMHRRRH 78 9*********************9 PP | |||||||
2 | zf-C2H2 | 15.7 | 4.4e-05 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ Gh_D09G1639 133 WVCQKCSKGYAVQSDYKAHLKTC 155 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.53E-5 | 53 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 55 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 56 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS01359 | 0 | 58 | 138 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 97 | 127 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 96 | 133 | 153 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 48 | 160 | 182 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MLPDNSCSSL PSLEPFTCID NGNNNNKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI 60 CNQGFQRDQN LQMHRRRHKV PWKLLKRETP VVRKRVFVCP EPSCLHHDPC HALGDLVGIK 120 KHFRRKHSNH KQWVCQKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA 180 CHMSRSRPQS QAMQPVCLSQ TASSSNPSND TNFSTVPWPS LELANTTTDT MLLNPTKDNS 240 PKNAHYHDLE LQLLTTSNPT EVSVPPKKHD HHSIQLQLSI GSFQSTCTEK EATKKSTEIH 300 EKPVFVASRL KEEAVAQLRL AMAEKAYAEE ARKQARRQVE LAKHEFAKAK RIRQQAQAES 360 AKAQALKNHA VKQINSTILQ VTCHACKHRF QATTPPKENS LVVSYISSAI TEGEVENDSL 420 TNLTKPTNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-17 | 129 | 181 | 3 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 2e-17 | 129 | 181 | 3 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}. | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486369.1 | 0.0 | PREDICTED: protein indeterminate-domain 16-like isoform X1 | ||||
Swissprot | F4IPE3 | 1e-143 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A0D2T0P3 | 0.0 | A0A0D2T0P3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G190500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM693 | 28 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-133 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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