PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G1532

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 397aa MW: 43426.6 Da PI: 6.0694

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1532	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.7e-17	53	98	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + Gh_D09G1532 53 KGPWSPEEDAILSELVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 98 79****************************.*********985 PP
2	Myb_DNA-binding	53.4	5.7e-17	105	149	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++ a++ +G++ W+ Iar ++ gRt++ +k++w++ Gh_D09G1532 105 RKPFTDEEDRMIISAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNST 149 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.3	48	103	IPR017930	Myb domain
SuperFamily	SSF46689	6.47E-31	51	146	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-15	52	101	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-16	53	98	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-26	54	106	IPR009057	Homeodomain-like
CDD	cd00167	1.85E-14	55	97	No hit	No description
PROSITE profile	PS51294	21.731	104	154	IPR017930	Myb domain
SMART	SM00717	1.5E-16	104	152	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	105	149	IPR001005	SANT/Myb domain
CDD	cd00167	1.44E-12	107	150	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.4E-24	107	153	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
METEVEAVDN GNGTTVAEIN VPSPPPLDGG EGGDCGSRDD SAAGGRARKQ RVKGPWSPEE 60 DAILSELVSK FGARNWSLIA RGIAGRSGKS CRLRWCNQLD PAVKRKPFTD EEDRMIISAH 120 AVHGNKWAVI ARLLPGRTDN AIKNHWNSTL RRRYMDLGRI NTESANMMED AGCLDKTKAS 180 SEETLSCAED SSFRSLEWKD ASSSEKLDNQ SKGKALTGTQ SNHELIELPT LFRPVARISA 240 FNVYNNMDAP EFVSPCSRPV PVLGPSIQTS KPDVGTCKLL EGVYTDRLVP LHCGHGCCGT 300 QNGQKSLLGP EFVEFSEPPS FPNYELAAIA TDISNLAWLK SGLENNSVRA MDDATAGTSH 360 RSQVHMGHFE ESQMSDRLRI EERNSKFMGT MTNLLST

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

METEVEAVDN GNGTTVAEIN VPSPPPLDGG EGGDCGSRDD SAAGGRARKQ RVKGPWSPEE  60
DAILSELVSK FGARNWSLIA RGIAGRSGKS CRLRWCNQLD PAVKRKPFTD EEDRMIISAH  120
AVHGNKWAVI ARLLPGRTDN AIKNHWNSTL RRRYMDLGRI NTESANMMED AGCLDKTKAS  180
SEETLSCAED SSFRSLEWKD ASSSEKLDNQ SKGKALTGTQ SNHELIELPT LFRPVARISA  240
FNVYNNMDAP EFVSPCSRPV PVLGPSIQTS KPDVGTCKLL EGVYTDRLVP LHCGHGCCGT  300
QNGQKSLLGP EFVEFSEPPS FPNYELAAIA TDISNLAWLK SGLENNSVRA MDDATAGTSH  360
RSQVHMGHFE ESQMSDRLRI EERNSKFMGT MTNLLST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-41	52	153	6	107	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19810	0.0	boll\| ovule

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016671094.1	0.0	PREDICTED: myb-related protein B-like
Swissprot	Q42575	1e-106	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A1U8I5S9	0.0	A0A1U8I5S9_GOSHI; myb-related protein B-like
STRING	Gorai.006G179700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8492	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-109	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]