PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1370
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 342aa    MW: 37859.9 Da    PI: 6.7712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1370genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++q+G+g +W + +++ g++R++k+c++rw++yl
      Gh_D09G1370 14 KGPWSPEEDAKLKEYIQQHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding36.89.1e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
      Gh_D09G1370  69 GEFSDDEDRIICTLFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.646962IPR017930Myb domain
SuperFamilySSF466896.5E-2711109IPR009057Homeodomain-like
SMARTSM007177.3E-131364IPR001005SANT/Myb domain
PfamPF002494.4E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-251569IPR009057Homeodomain-like
CDDcd001672.03E-91662No hitNo description
PROSITE profilePS5129421.60163117IPR017930Myb domain
SMARTSM007178.6E-1267115IPR001005SANT/Myb domain
PfamPF002491.8E-1069111IPR001005SANT/Myb domain
CDDcd001675.06E-870113No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIQ QHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC TLFASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLFGM  120
VPQSQRKPHQ IPHASFSSVL QSSSPSSPSP SSPLLYNCSN NTYHTPARSF SCFEASYSSS  180
FSNSSASCVN AASVLQPQES LLGQIQHYQL HDNGVQMFGG EASCSSSDGS CSNQICHNKE  240
LENSNGTVYD GDHQQFGMYS YNNFYSEAAD GSQKLMMALN GDHGTDGWSD HHKSSNGLLD  300
ETETPLDYGI EGIKQLISTT STSSCNSFIF YESKADENLL YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1156441e-110HQ115644.1 Gossypium hirsutum DNA-binding transcription factor blind 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691508.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A2P5Q1550.0A0A2P5Q155_GOSBA; Uncharacterized protein
STRINGGorai.006G162800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-76myb domain protein 36