PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1210
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 306aa    MW: 34031.3 Da    PI: 7.7722
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1210genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-17172226256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Gh_D09G1210 172 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 226
                  778899***********************************************98 PP
2HD-ZIP_I/II128.23.5e-41172261191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  Gh_D09G1210 172 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-AL 261
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046187.4E-763134IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.609.2E-18155222IPR009057Homeodomain-like
SuperFamilySSF466891.5E-18162229IPR009057Homeodomain-like
PROSITE profilePS5007117.216168228IPR001356Homeobox domain
SMARTSM003897.3E-16170232IPR001356Homeobox domain
PfamPF000463.7E-15172226IPR001356Homeobox domain
CDDcd000864.44E-16172229No hitNo description
PROSITE patternPS000270203226IPR017970Homeobox, conserved site
SMARTSM003407.2E-26228271IPR003106Leucine zipper, homeobox-associated
PfamPF021836.7E-11228262IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MELALSLGDP SKSFSFLDKT PKLSSKDLGF CMGLRLQEKV DAFEGEAATG DGDYKRVSSD  60
PPHQLDLLPF SPVPRVQPSS QLRFPWLTDN VMETGSSDGR GRGLDVNRLA VVALGEEAEE  120
GAALSSPNSA VSSFQVDFGF RNGSSRGKRE VEMETERGSS RASDDDDNGS TRKKLRLSKE  180
QSAFLEESFK EHNTLNPKQK LALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC  240
CETLTEENRR LQKELQELRA LKASQPFYMQ LPATTLTMCP SCERVATTST TADGKNGLLP  300
LTKTSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176TRKKLRL
2220228RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.88600.0boll
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9084231e-144DQ908423.1 Gossypium hirsutum clone LIB5327-009-A1-N1-C5_P_S_Gh484 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485645.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like
RefseqXP_016671464.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466651e-100HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0D2NSR60.0A0A0D2NSR6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8I6V30.0A0A1U8I6V3_GOSHI; homeobox-leucine zipper protein HAT14-like
STRINGGorai.006G143600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-87homeobox from Arabidopsis thaliana