PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G1197

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 316aa MW: 36375.8 Da PI: 8.2739

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1197	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.5e-32	147	201	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG ekAtPktil+lm+ +gLt+ hvkSHLQkYR+ Gh_D09G1197 147 KTRIRWTQDLHEKFVECVKRLGGCEKATPKTILKLMDTQGLTIFHVKSHLQKYRT 201 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-28	144	202	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.363	144	204	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-16	146	201	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-23	147	201	IPR006447	Myb domain, plants
Pfam	PF00249	7.1E-9	151	200	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-20	229	275	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MNTKRTDSQE LARQSLGFNR NCNLQPAMEG VPQQLNPGSS SSNPIMSGFH TPAYAFNATE 60 RRIQLDTSSY CPQHNIYSSI ESIAQDEPNY DFRNTLQSLV KSQICFDQYQ KSFERSYKFP 120 GSNAKTHFSF PSRVNQDQRA YCNKSNKTRI RWTQDLHEKF VECVKRLGGC EKATPKTILK 180 LMDTQGLTIF HVKSHLQKYR TARYMPEFTQ EGRTSTTDLT QIDVKTGLHL TEALQLQLDV 240 QRRLNEQLEF QRNLQLRIEE QGRRLKMMID EQQKANESLL KNQGVDIKPY EHDPSFGDLD 300 SSIAETSENV LTSGPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	147	204	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	147	204	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	147	204	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	147	204	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	147	204	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016673092.1	0.0	PREDICTED: uncharacterized protein LOC107892531
TrEMBL	A0A1U8I4F1	0.0	A0A1U8I4F1_GOSHI; uncharacterized protein LOC107892531
STRING	Gorai.006G142000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24434	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-67	G2-like family protein