PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D09G1183

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 376aa MW: 41739.8 Da PI: 8.8291

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D09G1183	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6e-12	271	316	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ ++ + a++L +Av+YI++Lq Gh_D09G1183 271 SIAERVRRTRISERMRKLQELVPNM----DRQTNTADMLDLAVDYINDLQ 316 689*******************7....699***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.881	265	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-15	268	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.29E-12	269	318	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	270	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-9	271	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	271	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MDSSTPPSCQ NQNSQPNSEL LRFLSAPSSL LATFSESLDT GLSKGGPHSD RLIYRFMNPS 60 QDKSGTEATV DHANSRQTFP GLPPHYPRQT SSAMDTSYLL LGMDPRCGKP VTSSLLRQSS 120 SPPGLFTNLS VQTGLGSYTN GELSPSSSSN RLKNQISFSS RLPSSLGILS QISEIGNDAK 180 LGTGYQYGSW NDSANFPENF SGSKTTQDND PNFFSANQNS DSGSRLHVLS HHLSLPKTSN 240 ETPAMEKFLS FQDSVPCKIR AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDRQTN 300 TADMLDLAVD YINDLQKQFK VTEREPQFPI QHFFLVLCAF FSSYTCNNII FFSDAKRPSC 360 KLQVLKYLKP IPDQVL

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MDSSTPPSCQ NQNSQPNSEL LRFLSAPSSL LATFSESLDT GLSKGGPHSD RLIYRFMNPS  60
QDKSGTEATV DHANSRQTFP GLPPHYPRQT SSAMDTSYLL LGMDPRCGKP VTSSLLRQSS  120
SPPGLFTNLS VQTGLGSYTN GELSPSSSSN RLKNQISFSS RLPSSLGILS QISEIGNDAK  180
LGTGYQYGSW NDSANFPENF SGSKTTQDND PNFFSANQNS DSGSRLHVLS HHLSLPKTSN  240
ETPAMEKFLS FQDSVPCKIR AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDRQTN  300
TADMLDLAVD YINDLQKQFK VTEREPQFPI QHFFLVLCAF FSSYTCNNII FFSDAKRPSC  360
KLQVLKYLKP IPDQVL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012485593.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X2
Swissprot	Q66GR3	5e-92	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A0D2RW67	0.0	A0A0D2RW67_GOSRA; Uncharacterized protein
STRING	Gorai.006G140200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6293	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-84	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]